PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G163000.2
Common NamePOPTR_0003s16150g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 315aa    MW: 34643.8 Da    PI: 7.1524
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G163000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix88.95.5e-2843137186
            trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                         rWt+qe+l+Li+++r  e+r+rrg+         + +p+W++vs +++++g++r+p+qC+++w+nl+++ykkike+e + ++e++s + + 
  Potri.003G163000.2  43 RWTRQEILVLIQGKRVAENRVRRGRasgmgigpgQVEPKWASVSTYCKKHGVNRGPVQCRKRWSNLAGDYKKIKEWEASIRDETESFWFMR 133
                         8**********************97778888888**********************************************99999999888 PP

            trihelix  83 dqle 86 
                         ++l+
  Potri.003G163000.2 134 NDLR 137
                         8875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.1E-1243131No hitNo description
PROSITE profilePS500906.34243109IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.8E-443108IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MALEQQLNLT PTQNSVDGER TNGVDTSIRD GGDDGNKAPR LPRWTRQEIL VLIQGKRVAE  60
NRVRRGRASG MGIGPGQVEP KWASVSTYCK KHGVNRGPVQ CRKRWSNLAG DYKKIKEWEA  120
SIRDETESFW FMRNDLRREK KLPGFFDREV YDILDGGGGT VQGLALALAP SSAAVEAETI  180
AEGVVFDSGR SAAAEDGLFS DFEQEEGGRS PEAVVKELQP IKAARPSTNP EMGSASHEDR  240
KRKRFAIDGG EETISSHSHL IHVLERNGKM LTAQLEAQNT NFQLDREQRK DHADGLVAVL  300
NKLADALGKI ADKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303748.10.0gt-2-related family protein
SwissprotQ8VZ201e-119ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLB9GZ240.0B9GZ24_POPTR; Gt-2-related family protein
STRINGPOPTR_0003s16150.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-117Trihelix family protein