PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G163000.1
Common NamePOPTR_0003s16150g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 343aa    MW: 37593.1 Da    PI: 7.1524
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G163000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix88.76.5e-2843137186
            trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                         rWt+qe+l+Li+++r  e+r+rrg+         + +p+W++vs +++++g++r+p+qC+++w+nl+++ykkike+e + ++e++s + + 
  Potri.003G163000.1  43 RWTRQEILVLIQGKRVAENRVRRGRasgmgigpgQVEPKWASVSTYCKKHGVNRGPVQCRKRWSNLAGDYKKIKEWEASIRDETESFWFMR 133
                         8**********************97778888888**********************************************99999999888 PP

            trihelix  83 dqle 86 
                         ++l+
  Potri.003G163000.1 134 NDLR 137
                         8875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-443108IPR009057Homeodomain-like
PROSITE profilePS500906.34243109IPR017877Myb-like domain
PfamPF138377.2E-1243131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MALEQQLNLT PTQNSVDGER TNGVDTSIRD GGDDGNKAPR LPRWTRQEIL VLIQGKRVAE  60
NRVRRGRASG MGIGPGQVEP KWASVSTYCK KHGVNRGPVQ CRKRWSNLAG DYKKIKEWEA  120
SIRDETESFW FMRNDLRREK KLPGFFDREV YDILDGGGGT VQGLALALAP SSAAVEAETI  180
AEGVVFDSGR SAAAEDGLFS DFEQEEGGRS PEAVVKELQP IKAAVAIPTP ISEKQYQPAP  240
QASQAQGSLN DKRPSTNPEM GSASHEDRKR KRFAIDGGEE TISSHSHLIH VLERNGKMLT  300
AQLEAQNTNF QLDREQRKDH ADGLVAVLNK LADALGKIAD KL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385878.10.0hypothetical protein POPTR_0003s16150g
SwissprotQ8VZ201e-121ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLU5GJI30.0U5GJI3_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16150.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP17471336
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-118Trihelix family protein