PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G150700.1
Common NamePOPTR_0003s15030g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 230aa    MW: 25310.5 Da    PI: 7.6238
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G150700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.1e-19124174255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ taeeA  a+++a+ +++g
  Potri.003G150700.1 124 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEEAGLAYDRAAYRMRG 174
                         7********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-31123183IPR001471AP2/ERF domain
PROSITE profilePS5103223.683124182IPR001471AP2/ERF domain
SMARTSM003806.1E-36124188IPR001471AP2/ERF domain
CDDcd000189.77E-30124183No hitNo description
PfamPF008471.5E-13124174IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-22124184IPR016177DNA-binding domain
PRINTSPR003671.5E-13125136IPR001471AP2/ERF domain
PRINTSPR003671.5E-13164184IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MNEVTSLCEF STLSHHRQHR SPSFSSLISC LTETWGDLPL RVDDSEDMVI YNSLRDAVRF  60
GWSPLDLTSP TATTATATIT RTTSVVKAEP GYEPEPEAEP MKLVQEAGLN EAAVSKKVVA  120
KGRHYRGVRQ RPWGKFAAEI RDPAKNGARV WLGTYETAEE AGLAYDRAAY RMRGSKALLN  180
FPHKIGSNEP DPVRVTTKRR EPETGLPAVD SGSAKTRRIL VANGDELEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-38120189170ATERF1
3gcc_A2e-38120189170ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at low levels in buds and leaves. Not expressed in cell culture. {ECO:0000269|PubMed:7756828}.
UniprotTISSUE SPECIFICITY: Weakly expressed in roots. {ECO:0000269|PubMed:10945353}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G150700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165940.0AC216594.1 Populus trichocarpa clone POP017-A13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304592.31e-170ethylene-responsive transcription factor 2
SwissprotQ404799e-83ERF2_TOBAC; Ethylene-responsive transcription factor 2
SwissprotQ9LW508e-83ERF2_NICSY; Ethylene-responsive transcription factor 2
TrEMBLA0A2K2B7F01e-168A0A2K2B7F0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s15030.11e-168(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-61ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]