PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G136300.1
Common NamePOPTR_0003s13610g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 351aa    MW: 39010.2 Da    PI: 6.0119
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G136300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-19127178156
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                         ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g+
  Potri.003G136300.1 127 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRGA 178
                         59********.**********72....45*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.30E-31127184No hitNo description
PfamPF008472.5E-12128177IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-21128185IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-29128185IPR001471AP2/ERF domain
PROSITE profilePS5103223.235128185IPR001471AP2/ERF domain
SMARTSM003803.5E-35128191IPR001471AP2/ERF domain
PRINTSPR003673.8E-10129140IPR001471AP2/ERF domain
PRINTSPR003673.8E-10151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MKMDHPVKFT EHRNQTKLSA PFLSNPVQYS KPPKIVRISV TDTYATDSSS DEENEVSRVS  60
SRKRHVTRVK KFVNEITIEP SAPPSRTADC VTSDTGLRAR PSRSARKKVG VDVSQARRLP  120
ATGVVGKKFR GVRQRPWGKW AAEIRDPLRR VRLWLGTYDT AEEAAMVYDN AAIQLRGADA  180
LTNFVTPPAR CSPAAATSGY ISGDESNSNH NINNDNVNVS SPISVLRFSE EAESQSVGSS  240
RETRKTGNEV REVKEDSCVS ENFSDFSEHN SSIDSLFPPT TDIYEFRSSV RGIFEETTIF  300
ADGGFLKDDD FRDMDLDFGF GFGFGLSSWN VQDHFQDIGD LFWSDSLIAI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-20126184362ATERF1
3gcc_A4e-20126184362ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G136300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303625.20.0ethylene-responsive transcription factor CRF1
TrEMBLA0A2K2B6M70.0A0A2K2B6M7_POPTR; Uncharacterized protein
STRINGPOPTR_0003s13610.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.11e-47cytokinin response factor 1