PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G112800.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family YABBY
Protein Properties Length: 159aa    MW: 17607.4 Da    PI: 6.7019
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G112800.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY937.3e-29111273121
               YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...lleelkveeenlksnvekee 90 
                         +  sseq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++      a + hl++s+  +   ll+e  + + n+  n+++ +
  Potri.003G112800.3  11 LLPSSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQFHLGHSFFSPshnLLDEIPNPTPNFLINQTNVN 101
                         5679*******************************************999999999999*****988723344444444444444433333 PP

               YABBY  91 sastsvsseklsenedeevprvppvirPPek 121
                             + s+  +    d+e+pr+p ++r  e 
  Potri.003G112800.3 102 ----DFSV-PVRGMADHELPRPPVINRRTEN 127
                         ....3333.3345667888888888887775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.6E-271470IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MSSSSTLSLD LLPSSEQLCY VHCNICDTVL AVSVPCTSLF KTVTVRCGHC TNLLPVNMRG  60
LLLPSANQFH LGHSFFSPSH NLLDEIPNPT PNFLINQTNV NDFSVPVRGM ADHELPRPPV  120
INRRTENHHI VVIFPSFFLI IIFSLLLFYQ ESLFASLG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.177050.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G112800.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582967.13e-77protein YABBY 4
TrEMBLB9T2V45e-76B9T2V4_RICCO; Axial regulator YABBY1, putative
STRINGXP_002532573.19e-77(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.14e-26YABBY family protein