PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G110300.4
Common NamePOPTR_0003s10970g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 875aa    MW: 100884 Da    PI: 8.3174
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G110300.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.24.3e-2698207191
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkkek. 72 
                         +fY+eYAk+vGFs+ +++s++s+ +g++++++fvC+++g+++++++                   +++ r +++ ++t+Cka+++vk+++ 
  Potri.003G110300.4  98 SFYKEYAKSVGFSTITKASRRSRISGKFIDAKFVCTRYGTKRDTSTIelpqpvsnadaatslpvkRKRGRINQSWSKTDCKACMHVKRRQq 188
                         5***************************************99988879**************998888899******************99 PP

                FAR1  73 dgkwevtkleleHnHelap 91 
                         dg+w+v ++ +eHnHe++p
  Potri.003G110300.4 189 DGRWVVRSFIKEHNHEIFP 207
                         ****************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.3E-2498207IPR004330FAR1 DNA binding domain
PfamPF105512.6E-33326418IPR018289MULE transposase domain
PROSITE profilePS5096610.311605642IPR007527Zinc finger, SWIM-type
SMARTSM005759.2E-7617644IPR006564Zinc finger, PMZ-type
PfamPF044341.2E-6618640IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 875 aa     Download sequence    Send to blast
MGIDLEQPSG EYHKEDRRPN VNVNTVDGGD GGHERDQIIV NSPDIGGNGC EKTGTVINGR  60
VLDGRKKPNA GDGINLNSVK DAEPHDGMEF ESKDEAFSFY KEYAKSVGFS TITKASRRSR  120
ISGKFIDAKF VCTRYGTKRD TSTIELPQPV SNADAATSLP VKRKRGRINQ SWSKTDCKAC  180
MHVKRRQQDG RWVVRSFIKE HNHEIFPDQA YYFRGHRNLN LGNDNVDALH AIRARTKKLY  240
VAMSRQSSGH RKHENLKGGV TNPSGNTKHL ALDEGDAQAM LDHFMHMQDE NPNFFYAIDL  300
NEEQQLRNVF WVDAKGRLDY GNFGDVIFFD TTYLKNEYKL PFAPFIGVNH HFQFLLLGCA  360
LVADETKTTY VWLMRAWLRA MGGHAPRVIL TDQDNALKEA IQEVFPNSRH CFCLWHVFSK  420
IPEKLSYVTR QHENFMLKFK KCIFKSWTSE QFEKRWWKMV EIFNLRNDVW FQSLYEDRQR  480
WIPVFMIDNF LAGMSTTQRS ESINTLFDRY MQRKTTLKEF LELQKAMLQE KFEEEAKADF  540
ETWHKQPGLK SPSPFGKQMA SIYTHAIFKK FQVEVLGVVA CHPRKETEDG ETQTFKVQDF  600
EDNQYFIVVW NEMTSYLSCS CRLFEFNGFL CRHVLIVMQM SGLHSIPSQY ILKRWTKDAK  660
SRQIMREQSD VVESRVQRYN DLCRRAFKLG DEGSLSQESY NIAFNALEEA LRKCESVNNS  720
IQNIIEPTSP PSNGPLDYDE VNQAHGATKT NKKKDTSRKK QVHPDPEVIP IRMHDSWQQM  780
EQLNSRVPTL DGYFGSQQTG QGMGQLNATA PNDDAHYMMQ QRMQGMGQIQ FRPQTIPSFF  840
DVQDGLQEMD SSNLGSSQLH GLATKHLHQK HLSR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G110300.4
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453596.10.0protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
SwissprotQ9SWG30.0FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBLA0A2K2B5850.0A0A2K2B585_POPTR; Uncharacterized protein
STRINGPOPTR_0003s10970.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.10.0FAR1 family protein
Publications ? help Back to Top
  1. Domergue F, et al.
    Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition.
    Plant Physiol., 2010. 153(4): p. 1539-54
    [PMID:20571114]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Wang C, et al.
    SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes.
    J Genet Genomics, 2015. 42(4): p. 161-8
    [PMID:25953354]
  4. Wang W, et al.
    A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis.
    J Integr Plant Biol, 2016. 58(1): p. 91-103
    [PMID:25989254]
  5. Ma L, et al.
    Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1.
    Mol Plant, 2016. 9(4): p. 541-57
    [PMID:26714049]
  6. Siddiqui H,Khan S,Rhodes BM,Devlin PF
    FHY3 and FAR1 Act Downstream of Light Stable Phytochromes.
    Front Plant Sci, 2016. 7: p. 175
    [PMID:26941752]
  7. Liu L,Li B,Liu X
    FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis.
    Plant Signal Behav, 2016. 11(10): p. e1238545
    [PMID:27660915]
  8. Ma L,Xue N,Fu X,Zhang H,Li G
    Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar.
    New Phytol., 2017. 213(4): p. 1682-1696
    [PMID:27859295]
  9. Liu Y, et al.
    Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1.
    Plant Cell, 2017. 29(9): p. 2269-2284
    [PMID:28842534]
  10. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]