PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G077200.1
Common NamePOPTR_0003s07490g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 266aa    MW: 29497 Da    PI: 6.7682
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G077200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047201223123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp+C k+F +   L  H r+H
  Potri.003G077200.1 201 FECPYCFKVFGSGQALGGHKRSH 223
                         89**************9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.1E-7328IPR007087Zinc finger, C2H2
SMARTSM003550.11426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.912431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.40.105.1E-4144212IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF576677.74E-7158223No hitNo description
PfamPF139120.083158178IPR007087Zinc finger, C2H2
SMARTSM0035554158178IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058158188IPR007087Zinc finger, C2H2
PfamPF139121.8E-11201224IPR007087Zinc finger, C2H2
PROSITE profilePS501579.681201223IPR007087Zinc finger, C2H2
SMARTSM003550.15201223IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280203223IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MERHKCKLCV RTFPNGRALG GHMKAHLAAT RQQLGGLDRN ESFSSSYSSS SDPEFSFTVD  60
AGSVVVQDRE SETESRNPTR RRSKRIRKSC AEPEPVSSVS DTSPEEDVAR CLMMLSRDVW  120
MRNIEEEYEE QGGKDGERSV EMLEEAEEIK VSKIRGKFRC EKCMKLFRSS RALSGHKRIC  180
SLNATEVRRF AGSADANDRI FECPYCFKVF GSGQALGGHK RSHLIGSSTS ISGVVEASTK  240
LENNLIDLNL PAPVEDDEFS VVSDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G077200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452722.11e-165zinc finger protein ZAT9
TrEMBLA0A2K2B3910.0A0A2K2B391_POPTR; Uncharacterized protein
STRINGPOPTR_0003s07490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Representative plantOGRP24041030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.18e-49C2H2-like zinc finger protein