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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G077200.1 | ||||||||
Common Name | POPTR_0003s07490g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 266aa MW: 29497 Da PI: 6.7682 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00047 | 201 | 223 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F + L H r+H Potri.003G077200.1 201 FECPYCFKVFGSGQALGGHKRSH 223 89**************9999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.1E-7 | 3 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.912 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.40.10 | 5.1E-4 | 144 | 212 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57667 | 7.74E-7 | 158 | 223 | No hit | No description |
Pfam | PF13912 | 0.083 | 158 | 178 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 54 | 158 | 178 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.058 | 158 | 188 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.8E-11 | 201 | 224 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.681 | 201 | 223 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.15 | 201 | 223 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 203 | 223 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |