PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G077200.1
Common NamePOPTR_0003s07490g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 266aa    MW: 29497 Da    PI: 6.7682
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G077200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047201223123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp+C k+F +   L  H r+H
  Potri.003G077200.1 201 FECPYCFKVFGSGQALGGHKRSH 223
                         89**************9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.1E-7328IPR007087Zinc finger, C2H2
SMARTSM003550.11426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.912431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.40.105.1E-4144212IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF576677.74E-7158223No hitNo description
PfamPF139120.083158178IPR007087Zinc finger, C2H2
SMARTSM0035554158178IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058158188IPR007087Zinc finger, C2H2
PfamPF139121.8E-11201224IPR007087Zinc finger, C2H2
PROSITE profilePS501579.681201223IPR007087Zinc finger, C2H2
SMARTSM003550.15201223IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280203223IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding