PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G050700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 270aa    MW: 29453.2 Da    PI: 4.7597
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G050700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.6e-1987137155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr++  +g+Wv+eIr p++   + r++lg+f t+e+Aa+a++ a+++++g
  Potri.003G050700.1  87 PVYRGVRRRA-WGKWVSEIRQPRK---KSRIWLGTFPTPEMAARAHDVAALCIKG 137
                         68*****777.**********843...6***********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.3E-1487137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-3288146IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2188146IPR016177DNA-binding domain
SMARTSM003808.5E-3788151IPR001471AP2/ERF domain
PROSITE profilePS5103223.85488145IPR001471AP2/ERF domain
PRINTSPR003672.3E-1089100IPR001471AP2/ERF domain
CDDcd000181.55E-3389147No hitNo description
PRINTSPR003672.3E-10111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MVFSIEILNI AWDNRKILLT PSLPPFSSQT SPQISVPEMN EESTSSSNST CNSPPPSLAT  60
TITNKLNKQN PIQQSSRSKV RDCSKHPVYR GVRRRAWGKW VSEIRQPRKK SRIWLGTFPT  120
PEMAARAHDV AALCIKGDSA ILNFPELADS LPRPVSVMPR DIQSAAAKAA AMVEFNSPSP  180
SSSLSSSSVT VSEDVAESEE EYLSEIVELP NIEGSFDSPD QSRIEFMLFD SVDGHGWVYP  240
PLDLCGEFSD QLLGLESLIS SNLAGSVLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-19841461073Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G050700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303301.11e-168ethylene-responsive transcription factor TINY
SwissprotQ9LYD35e-58DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2K2B1R80.0A0A2K2B1R8_POPTR; Uncharacterized protein
STRINGPOPTR_0003s04920.11e-168(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-52ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,B├╝low L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]