PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G036900.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 546aa    MW: 59001.2 Da    PI: 9.3286
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G036900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.0001693113323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C++C+k F r  nL+ H r H
  Potri.003G036900.2  93 CEICNKGFQRDQNLQLHRRGH 113
                         *******************88 PP

2zf-C2H213.10.00029167189123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k++  +s+ k H +t+
  Potri.003G036900.2 167 WKCVKCSKRYAVQSDWKAHAKTC 189
                         58******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-590113No hitNo description
Gene3DG3DSA:3.30.160.602.6E-590113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1191113IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.82491113IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SMARTSM00355140132162IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-4155188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.08E-5162187No hitNo description
SMARTSM00355250167187IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MMKSLMFHQQ QQQILQEENM SNLTSASGDQ ASVSSGNRNE TGTNYGVQQY FAPPAQTQPP  60
VKKKRNLPGN PDPDAEVIAL SPTTLMATNR FLCEICNKGF QRDQNLQLHR RGHNLPWKLK  120
QRTSKEVRKK VYVCPEPNCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCV KCSKRYAVQS  180
DWKAHAKTCG TREYRCDCGT LFSRRDSFIT HRAFCEALAE ESARAITGAP GQFLSTQPGS  240
STPRINLQVP QFSGQDLHAF SLKKEQQSSF RSRPDFPPWL ACPPGLGGPG PPHQQTPIDL  300
LSSSSSPSIL STRLGQEFTP THQDMSPNPN PSLGPTLPQF PSGPSPHMSA TALLQKAAQM  360
GATVSSKTTG LMRPHHHQQQ QEQAHVSANA DNVSNTNTAV FGLNLSSREE LASGGLFFSG  420
LAPFGNKAGP TVPSGASSTG ALPSGALIED MMSSLSSASG FEGTSLEDAL ASGVLNSKKD  480
VNFSYSLSKT TRNDNGGGSS GGNEGMTRDF LGLRPLSHSD ILSMAGLSNC VNTSHEQQIH  540
KPWKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-34163224364Zinc finger protein JACKDAW
5b3h_F6e-34163224364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117129KLKQRTSKEVRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.120611e-149bud| catkin
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G036900.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2129270.0AC212927.1 Populus trichocarpa clone POP017-N15, complete sequence.
GenBankAC2164670.0AC216467.1 Populus trichocarpa clone POP034-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452436.10.0protein indeterminate-domain 7
RefseqXP_024452437.10.0protein indeterminate-domain 7
RefseqXP_024452438.10.0protein indeterminate-domain 7
RefseqXP_024452440.10.0protein indeterminate-domain 7
RefseqXP_024452449.10.0protein indeterminate-domain 7
RefseqXP_024452450.10.0protein indeterminate-domain 7
RefseqXP_024452451.10.0protein indeterminate-domain 7
RefseqXP_024452452.10.0protein indeterminate-domain 7
SwissprotQ8H1F51e-127IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A2K2B1300.0A0A2K2B130_POPTR; Uncharacterized protein
STRINGPOPTR_0003s04470.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-125indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]