PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G031400.1
Common NamePOPTR_0003s02570g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 659aa    MW: 76224 Da    PI: 7.9232
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G031400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.24.9e-2250133189
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         ++Yn YAkevGF+vr+++s  +++++e + + ++Cs +g+++ ++ +     r r+etrtgC a++++++ ++++w+v ++ leHnH+l
  Potri.003G031400.1  50 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMVRMRLADSKRWRVLEVMLEHNHSL 133
                         69*****************************************9988.....99*********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-1950133IPR004330FAR1 DNA binding domain
PfamPF105514.0E-29253346IPR018289MULE transposase domain
PROSITE profilePS509669.73540576IPR007527Zinc finger, SWIM-type
PfamPF044345.8E-4550572IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6551578IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MAEAGCSNER LTNGELNEKE KELDDGTEEK KEFVAPAVGM EFESYDDAYN YYNCYAKEVG  60
FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMV RMRLADSKRW  120
RVLEVMLEHN HSLGAKIYRP VKKVSTGNKR KSLSSNSDAE GRTIKLYRAL VIDSEGNGNS  180
SLNARDVMNF SELPDQLNLK RGDAQAIYNY FCRMQLTNPN FFYLMDLNDE GHLRNVFWVD  240
ARSRASCGYF GDVVYIDNTY LSSKFEIPLV AFVGTNHHSQ SVLLGCGLLA GETTESYIWL  300
FKAWITCMSG CSPQTIITDR CRTLQTAIAE AFPRAHHCFG LSHIMKRVPE KLGGLRHYDA  360
IKKAFMKAVY ETLKVIEFEV AWGFMVQRFG VGDHEWLQSL YEDRVRWAPV YLKDTVFAGM  420
SASRSGEILN PFFERYVHKQ TPLKEFLDKY ELALQKKHKE ETIADIESRS VGPALKTRCS  480
FELQLSKLYS KEIFKKFQFE VEEMYSCFST TQIHVDGPII IFLVKERVLG ESNRREIRDF  540
EVLYNRSAGE VRCICSCFNF YGYLCRHALC VLNFNGVEEI PCKYILPRWK KDYKRLYIPD  600
HSSNDVDSTD HMQWFNQLYR SALQVVEEGV ISLEHYSVAL EAFEESQNRV REVEEKQA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G031400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385298.10.0protein FAR1-RELATED SEQUENCE 6
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLB9MWN40.0B9MWN4_POPTR; Uncharacterized protein
STRINGVIT_09s0002g07400.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]