PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G031200.1
Common NamePOPTR_0003s02550g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 733aa    MW: 85391.1 Da    PI: 4.8568
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G031200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.67.6e-22124207189
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         ++Yn YAk++GF +r+++s ++++++e   + ++C++eg++++++ +     ++r+etrtgC a+l++++ ++++w+v++++leHnH +
  Potri.003G031200.1 124 NYYNCYAKDLGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTSKEVH-----SRRKETRTGCLAMLRLRLVESNRWRVDEVKLEHNHLF 207
                         69****************************************98877.....8999*******************************77 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-19124207IPR004330FAR1 DNA binding domain
PfamPF105518.9E-29329420IPR018289MULE transposase domain
PROSITE profilePS509669.878614650IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-5625652IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MIEIEEGSQN SEQILEEEGD DLEFDSNDLE IEGDDPGIDD DDLGIEDNNL ELEDKNLENE  60
GHDLPEGNDL EDNCEQLFDI EYHVLENNRD DATVEDVRNG DFLGKDYPPP FVGMQFESYD  120
DAYNYYNCYA KDLGFAIRVK SSWTKRNSKE KRGAVLCCNC EGFKTSKEVH SRRKETRTGC  180
LAMLRLRLVE SNRWRVDEVK LEHNHLFDPE RAQNSKSHKK MDAGAKRKVE PTVDVEVRTI  240
KLYRTAAVDP LGYGSTNSNE GESSQHVDRS KRLKLKKGDA QIIHNYFCQV QLTNPNFFYL  300
MDLNDEGFLR NVFWIHYRSR AAYGYFSDVV IFDTTCLLNK YEIPLFAFVG VNQHGQSILL  360
GCGLLVDETF ETYIWLFRVW LTCMLGRPPQ TIITDQCKAM QGAIAEVFPR AHHRFCLSRV  420
AHKILDNLGM LQDYEGFQRT LNVTIHDSLK VDEFEMAWED MIQRFRIADN EWLRTCYEDR  480
ERWVPVYSKD TSFAGISTFL KDESTQFFNG YVSQQTTLKE FFDMNELVLQ KKYQKEALDD  540
FESRNSSPIL RTGSFYELQL SRVYTNEIFR RFQDEVVMMS SCFGITQGHT SGPLVTYVIK  600
ERQGEENSRD IKNFEVMYDK RGAEVRCICS CFNFKGYLCR HALCILNYNG VEEIPPLYIL  660
ARWRKDLKRF YVPDGGSNNV DIANPVQWFD HLYRRAMQVV EEGMISQDRY MVAWQAFKES  720
LNKVRLVAEK HL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.109570.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G031200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1477811e-136EF147781.1 Populus trichocarpa clone WS0124_P20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385296.10.0protein FAR1-RELATED SEQUENCE 8
SwissprotQ9S7930.0FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBLU5GHZ00.0U5GHZ0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s02550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.10.0FAR1-related sequence 8
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]