PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G010600.1
Common NamePOPTR_0003s00430g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 111aa    MW: 12591.5 Da    PI: 9.9365
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G010600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.69.5e-13590189
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                        f k+l  +d   ++rl l+ ++++++  g    +  l+++de+g++W++++++  +++++  l++ W  Fv++++Lk+gD++v+ ld++++
  Potri.003G010600.1  5 FTKKL--NDIDIERRLLLSENCIKDFpRGH---EAYLKFKDEDGQVWTFRCRVpPGGGSKPALSGDWFLFVRSKDLKVGDVIVIALDREKD 90
                        66777..67777788999999999995333...346***************99544444599***********************998744 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.5451105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-14290IPR015300DNA-binding pseudobarrel domain
CDDcd100175.80E-163103No hitNo description
SuperFamilySSF1019363.27E-13489IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-45105IPR003340B3 DNA binding domain
PfamPF023625.6E-10690IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MEKSFTKKLN DIDIERRLLL SENCIKDFPR GHEAYLKFKD EDGQVWTFRC RVPPGGGSKP  60
ALSGDWFLFV RSKDLKVGDV IVIALDREKD QAAGEQFTIK VKKTTSTTRK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G010600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2139260.0AC213926.1 Populus trichocarpa clone POP063-D18, complete sequence.
GenBankAC2141000.0AC214100.1 Populus trichocarpa clone POP063-I02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002452.12e-64PREDICTED: double-stranded RNA-binding protein 3-like
TrEMBLB9GZ469e-75B9GZ46_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00430.11e-75(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13561527