PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G263600.1
Common NamePOPTR_0002s26430g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 502aa    MW: 53204.9 Da    PI: 9.158
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G263600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-057193123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+k F r  nL+ H r H
  Potri.002G263600.1 71 FVCEICNKGFQRDQNLQLHRRGH 93
                        89*******************88 PP

2zf-C2H2140.00015147169123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC+ C+k +  +s+ k H++t+
  Potri.002G263600.1 147 WKCERCSKKYAVQSDWKAHLKTC 169
                         58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-57093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0177193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9497193IPR007087Zinc finger, C2H2
PfamPF121718.0E-57193IPR022755Zinc finger, double-stranded RNA binding
SuperFamilySSF576674.82E-77193No hitNo description
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM0035583112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.8E-5135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.82E-7142167No hitNo description
SMARTSM00355130147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MVGGENLSRI TVSKASGEDT ISNVSSFGNQ GMPHSITVPP PKKKRNLPGM PDPDAEVVAL  60
SPKTLVATIR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRTNKEPRKR VYVCPESSCV  120
HHNPARALGD LTGIKKHFYR KHGEKKWKCE RCSKKYAVQS DWKAHLKTCG TKEYKCDCGT  180
LFSRRDSFVT HRAFCDALAE ESARAQTLAI MGREGNGCDI KRVGASPPPP PLTPSTSVVS  240
PGLSVQSSEL AENPIGLSPP PIACASATST SSTSSTSNVF ATTFASSTAT PAAIPQQASV  300
PSSFPNLFCG LARSDYPTTM PTPRAIEPPS LSLSPSFYLS NNTSSLFSTE QEHYHYTPSP  360
QPAMSATALL QKAAQMGATT SNPSFLRGLG LPRSTNQDSN CNKWDVKPEN NTTVAAGLGL  420
GLPSSDVMMG SSSLFGNKPA TLDLLGLGMD AASSALLNSY SGGFNVGAAT AAAYGGGGGR  480
GTSEETWDGV PERKPYGSTG A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-36143209369Zinc finger protein JACKDAW
5b3h_F8e-36143209369Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}.
UniprotTISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G263600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006386940.10.0protein indeterminate-domain 2
SwissprotQ9LVQ71e-136IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLU5GU120.0U5GU12_POPTR; Uncharacterized protein
STRINGPOPTR_0002s26430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-112indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]