PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G239400.2
Common NamePOPTR_0002s24040g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 196aa    MW: 22277.2 Da    PI: 8.3273
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G239400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.41.6e-2528119190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         kfY+eYA+++GF vr+ + ++s  +g++  r++ C+k+g++ ++++       +++r++ r gCka++ vk++k+gkw+vt++e++HnH+l
  Potri.002G239400.2  28 KFYSEYARRLGFVVRVMQRRRSGIDGRTLARRLGCNKQGFSPNNRTIvgPGPDKKPRPSAREGCKATILVKMDKSGKWVVTRFEKDHNHPL 118
                         6***************************************99988777778999************************************9 PP

                FAR1  90 a 90 
                         +
  Potri.002G239400.2 119 V 119
                         6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-2328119IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDVEEEEEAG IVEPCVGMEF ESEDAARKFY SEYARRLGFV VRVMQRRRSG IDGRTLARRL  60
GCNKQGFSPN NRTIVGPGPD KKPRPSAREG CKATILVKMD KSGKWVVTRF EKDHNHPLVV  120
TASGFSSSGD KDKKIEELTK ELEHQDHLCA TYREKLVSFM NSIEEQTEEL ASKIQLIVDN  180
VRKVESEVQN FSRRR*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G239400.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303021.11e-143protein FAR1-RELATED SEQUENCE 5
RefseqXP_024451613.11e-143protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL84e-24FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLB9GNH51e-142B9GNH5_POPTR; FAR1 family protein
STRINGPOPTR_0002s24040.11e-143(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.18e-70FAR1 family protein
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]