PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G239300.3
Common NamePOPTR_0002s24030g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 190aa    MW: 21833.7 Da    PI: 5.0099
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G239300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.41.6e-2578168190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++    +++  r+ ++tr gC+a+l++ +++  +w+vtk+  eHnH+l+
  Potri.002G239300.3  78 EFYIAYGRRTGFTVRIHHNRRSRINNMVIGQDFVCSKEGFREKKYVYrKDRVLRPPPVTREGCQAMLRLALKDGITWVVTKFIAEHNHALM 168
                         6*****************************************998873455667999********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.1E-2378168IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDSTSKQAFD LDETESCFVV ENYDENEFVD DELSENIELC MDEVDKIIEQ SSETLGSIND  60
AMEPCIGMEF KSRDDAREFY IAYGRRTGFT VRIHHNRRSR INNMVIGQDF VCSKEGFREK  120
KYVYRKDRVL RPPPVTREGC QAMLRLALKD GITWVVTKFI AEHNHALMSP SKVPWRGSAK  180
SLVSEVCFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G239300.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303020.11e-137protein FAR1-RELATED SEQUENCE 8
TrEMBLA0A2K2BNM11e-136A0A2K2BNM1_POPTR; Uncharacterized protein
TrEMBLB9GNH41e-136B9GNH4_POPTR; Uncharacterized protein
STRINGPOPTR_0002s24030.11e-137(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.22e-23FAR1 family protein