PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G239300.1
Common NamePOPTR_0002s24030g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 258aa    MW: 30079.9 Da    PI: 5.0577
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G239300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.43.2e-2578168190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++    +++  r+ ++tr gC+a+l++ +++  +w+vtk+  eHnH+l+
  Potri.002G239300.1  78 EFYIAYGRRTGFTVRIHHNRRSRINNMVIGQDFVCSKEGFREKKYVYrKDRVLRPPPVTREGCQAMLRLALKDGITWVVTKFIAEHNHALM 168
                         6*****************************************998873455667999********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2278168IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDSTSKQAFD LDETESCFVV ENYDENEFVD DELSENIELC MDEVDKIIEQ SSETLGSIND  60
AMEPCIGMEF KSRDDAREFY IAYGRRTGFT VRIHHNRRSR INNMVIGQDF VCSKEGFREK  120
KYVYRKDRVL RPPPVTREGC QAMLRLALKD GITWVVTKFI AEHNHALMSP SKVPWRGSAK  180
SLVSEDEKDR RIRELTIELN NEKQRCKRRC AAYQEQLRMV LSYVEEHTIH LSNKVQDIVN  240
NVKELENDME DSDCKYV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G239300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303020.10.0protein FAR1-RELATED SEQUENCE 8
TrEMBLB9GNH40.0B9GNH4_POPTR; Uncharacterized protein
STRINGPOPTR_0002s24030.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88613044
Representative plantOGRP8956514
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.19e-39FAR1 family protein