PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G199300.2
Common NamePOPTR_0002s20030g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 760aa    MW: 86585.6 Da    PI: 6.3434
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G199300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.71.3e-2062155190
                FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 
                         +fY+++Ak++GFs+r+++++ +    + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+      +w++t +++ HnH
  Potri.002G199300.2  62 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQIKASDDGKLQRNRKSSRCGCQAYMRIVKRAdfdVPEWRITGFNNIHNH 152
                         6***************999887455667********************9*******************98887676789************ PP

                FAR1  88 ela 90 
                         el 
  Potri.002G199300.2 153 ELL 155
                         *96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1762155IPR004330FAR1 DNA binding domain
PfamPF105515.9E-25278369IPR018289MULE transposase domain
PROSITE profilePS509669.817540588IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-7561586IPR007527Zinc finger, SWIM-type
SMARTSM005751.7E-6563590IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MEIMSGLTDV VKETSESGMD SCPDDIGTVE EVPEDTILSR QTSVNLVPFI GQRFVSQDAA  60
YEFYCSFAKQ CGFSIRRHRT RGKDGVGRGI TRRDFTCHRG GYPQIKASDD GKLQRNRKSS  120
RCGCQAYMRI VKRADFDVPE WRITGFNNIH NHELLKSNEV QLLPAYCTMS ADEKSRICMY  180
AKAGMSVRQM LRLMELEKGV KLGCLPFTEI DVRNLLQSFR NVNRDNDAID LLEMCKYKKD  240
NDPNFKYNFH IDANKRLEQI AWSYASSIQS YEAFGDSIIF DTTHRLDTYD MILGIWIGVD  300
NHGTNCFFGC VLLRDENTGS FSWALKTFLE FMDGKAPETI LTDQNMWLKE AISVEMPGTK  360
HAFCIWHIIA KFSDWFSVPL GSQYDKWKAE FHRLYGLQSV EDFEIGWRNM VDAYGMHGNK  420
HIVSLFALRT FWALPYLRCC FFAGMTSTFQ SESINAYIQR VLNAQSLDNF VEQVAAAVEF  480
KEPGPRQKMQ RKVHKISLKM GSPIESHAAT VLTPYAFNKL QEELVLAPQY ASLMVDESYF  540
IVRIHTDMDG GCKVIWIPHD EFISCSCHLF EFSGILCRHV LRVLSTNNCF HIPDRYLPVR  600
WRDVSTSLTK PFQTFTSEEH AEKVQLLQSM VSTLLTESIE TEERLDVACD QVAEVLSHIK  660
EFPRPGHGCN DIGYNSPSDS LILPEVEDSD GFVHGFADGN SHEPLTLGKM KERRLRDGIN  720
IFRKRRRCSV PCCGQYGHDA TDCPMMEGGD LNGDGLGFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1722726RKRRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G199300.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302746.20.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLB9GSF40.0B9GSF4_POPTR; Uncharacterized protein
STRINGPOPTR_0002s20030.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]