PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G149000.1
Common NamePOPTR_0002s15000g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 245aa    MW: 24986.3 Da    PI: 7.5021
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G149000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.91.2e-41331331100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l
  Potri.002G149000.1  33 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPAHKRPDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNL 123
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +ael++l+++
  Potri.002G149000.1 124 QAELSYLQAH 133
                         *****99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.52732134IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-4033131IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSTTTTNPIN SGVGGGSSGG GGAGGSSGGG GGPCGACKFL RRKCVPGCIF APYFDSEQGA  60
AHFAAVHKVF GASNVSKLLL HIPAHKRPDA VVTICYEAQA RLRDPVYGCV AHIFALQQQV  120
VNLQAELSYL QAHLAAMEVP SPPPPPPPAL VTSPPFSIAD LPSASSIPGA AYDLSSLFDP  180
MVQPSWSMQP RQLDPHQFGG SSGTSETSGG DLQALARELL HRRGSLPPGS VPCSDALASS  240
SISK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.116230.0bud
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301295.21e-176hypothetical protein POPTR_0002s15000g
SwissprotO221311e-80LBD18_ARATH; LOB domain-containing protein 18
TrEMBLB9GPH41e-176B9GPH4_POPTR; Uncharacterized protein
STRINGVIT_15s0048g00830.t012e-97(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.18e-79LOB domain-containing protein 18