PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G129900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 361aa    MW: 41745.2 Da    PI: 6.5843
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G129900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.8e-1631113998
                         HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         d++  + l +p kf  +h +kk+ +  + l+ +sg +W+v+l  +  ++++++++GW+eFvk++ L+ +D ++Fk++++s+f   v +f+
  Potri.002G129900.1  31 DAGFGHHLPIPEKFS-NH-LKKKLPENVFLKGPSGGTWQVEL--TTDDDTMFFKNGWEEFVKDHFLE-KDLLIFKYNRESCF--EVLIFD 113
                         555667799*****7.44.45668889***************..99999***************997.9********99***..888877 PP

2B347.62.9e-15261345187
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+ v++p +v ++  +v+p   a++h       e+k+++l+  + ++W+ k+ y+k++++  l++GW++F+ +n+L+e D+++F+ ++ 
  Potri.002G129900.1 261 FVVVMKPTHVYRKFYMVIPSGWANRHfrT---LEKKDVILRM-KENTWNTKFLYCKSKNSGGLSSGWRNFALDNKLQEFDVCLFEPSSA 345
                         7899**********************532...3345666655.889********99999999***********************6544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.83E-1822113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.9723115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-1924113IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.6E-926115IPR003340B3 DNA binding domain
CDDcd100172.29E-1731113No hitNo description
PfamPF023621.0E-1231113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-19256358IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-17257358IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.3E-8261360IPR003340B3 DNA binding domain
CDDcd100173.25E-22261358No hitNo description
PfamPF023624.5E-14261346IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97261360IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGEETCEDCR SWEEELYWTH FQCTHFLQII DAGFGHHLPI PEKFSNHLKK KLPENVFLKG  60
PSGGTWQVEL TTDDDTMFFK NGWEEFVKDH FLEKDLLIFK YNRESCFEVL IFDGQSLCEK  120
AASYFVRKCG HRERDSFVHA KRKTVEDSAE VTIACPQDSL GGTAEKSAND YIYKTSVENT  180
VISEAINKKT RREIKFSKPT QTRQSVRYEE PSSTDEETET KPDVEHIPIN APYVSSRRMV  240
TEEDKLNALR LAQTAQSNEG FVVVMKPTHV YRKFYMVIPS GWANRHFRTL EKKDVILRMK  300
ENTWNTKFLY CKSKNSGGLS SGWRNFALDN KLQEFDVCLF EPSSAVNNSI VFDVSIFRVL  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G129900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450087.10.0B3 domain-containing protein REM16
TrEMBLA0A3N7EIL20.0A0A3N7EIL2_POPTR; Uncharacterized protein
STRINGcassava4.1_010400m1e-164(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Representative plantOGRP6299819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-78B3 family protein