PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G124000.1
Common NamePOPTR_0002s12550g, RAP2L8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 159aa    MW: 17677.8 Da    PI: 8.4604
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G124000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.2e-183584255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Potri.002G124000.1 35 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPIAAARAYDTAVFYLRG 84
                        69*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.9E-343598IPR001471AP2/ERF domain
PROSITE profilePS5103221.8253592IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-203593IPR016177DNA-binding domain
PfamPF008472.3E-113684IPR001471AP2/ERF domain
CDDcd000181.87E-263694No hitNo description
PRINTSPR003675.0E-113647IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-293693IPR001471AP2/ERF domain
PRINTSPR003675.0E-117494IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MEGECYTSPS ASSSTPTISS IGKRKHGRQQ NQEKPYRGIR MRKWGKWVAE IREPNKRSRI  60
WLGSYSTPIA AARAYDTAVF YLRGPSVRLN FPDLIHQEDE LCDVSAASIR KKATEVGAKV  120
DALQTALHAS PGDNSPANRL LLSEKPDLNE YPENCDEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-153492463ATERF1
3gcc_A6e-153492463ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in flowers, leaves, and stems, and at very low levels in roots. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G124000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559490.0EF155949.1 Populus trichocarpa RAP2-like protein (RAP2L8) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301169.11e-115ethylene-responsive transcription factor RAP2-1
SwissprotQ8LC301e-49RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA9PL981e-114A9PL98_POPTR; ERF family protein
STRINGPOPTR_0002s12550.11e-102(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.11e-51related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]