PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G102900.1
Common NamePOPTR_0002s10330g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ZF-HD
Protein Properties Length: 263aa    MW: 27919.9 Da    PI: 7.6957
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G102900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.31.3e-3158112257
         ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                         +++rY+eC+kNhA+ +Ggha+DGCgEfm++ g+egt +alkCaAC+CHRnFHR+e+
  Potri.002G102900.1  58 SSIRYRECQKNHAVGIGGHALDGCGEFMAA-GDEGTLDALKCAACNCHRNFHRKES 112
                         5789*************************9.999********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.5E-2960112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2261112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.5E-2961111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.20762111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.61E-22185260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-34186261IPR009057Homeodomain-like
TIGRFAMsTIGR015654.3E-26199255IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEFDEHEDQE EEMTGMAVMP PGYDSISNSV AARSKIGPAG GGGEGASTTT ANTNTRKSSI  60
RYRECQKNHA VGIGGHALDG CGEFMAAGDE GTLDALKCAA CNCHRNFHRK ESGGGGGEVI  120
LYHGHHHQQQ PQFSPYYRAP PPTGYLHHLT PTPQSRPLAL PAASGGGAAA AAGYSREEED  180
VSNPSSSGGG GGGGGSSSKK RHRTKFTQEQ KEKMLAFAES LGWRIQKHDE AAVEQFCAET  240
GVKRHVLKVW MHNNKHTLGK KP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-281982571675ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.119921e-125bud
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G102900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302329.10.0zinc-finger homeodomain protein 2
SwissprotQ6YXH54e-77ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLB9GV220.0B9GV22_POPTR; Uncharacterized protein
STRINGPOPTR_0002s10330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.15e-69homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]