PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G098200.1
Common NamePOPTR_0002s09840g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 274aa    MW: 30606.9 Da    PI: 8.5536
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G098200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-05117136120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++C+ C k+F+r  nL+ H+
  Potri.002G098200.1 117 FSCHVCFKTFNRYNNLQMHL 136
                         89*****************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.868117144IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-4117136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
SuperFamilySSF576673.09E-5183221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEPSEISINS CLIASSSTNH NDIEPLDLFP GTSHSSRGPI PFLSSLINSP EAPFSENPKA  60
IGDEDMDADV TMALRIGLPD YSGYSSINQN VKGNVNVTAK QYWIPTPEQI LIGFTHFSCH  120
VCFKTFNRYN NLQMHLWGHG SQYRRGHESL KGTQPRAMTG IPCFCCAEGC KNNIEHPRAK  180
PLKDFRTLQT HYKRKHGLKP FMCRKCGKFL AVKGDWRTHE KNCGKRWLCV CGSDFKHKRS  240
LKDHIKSFGL GHGPFPPSFD GVELLDDASS LPI*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Developing ovules and young seeds. {ECO:0000269|PubMed:11782451}.
UniprotTISSUE SPECIFICITY: Restricted to the endothelium, the innermost cell layer of the seed coat and detected to a lesser extent in the other cell layers of the testa. {ECO:0000269|PubMed:11782451}.
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G098200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301059.30.0protein TRANSPARENT TESTA 1
SwissprotQ8VWG31e-105TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLB9GUX50.0B9GUX5_POPTR; Uncharacterized protein
STRINGPOPTR_0002s09840.11e-157(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-108C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]