PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G097700.4
Common NamePOPTR_0002s09790g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 1265aa    MW: 138405 Da    PI: 4.7099
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G097700.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.8e-05426448123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC++C+  F  +++L +H+ +H
  Potri.002G097700.4 426 YKCHKCTVAFDKQDDLLQHLLSH 448
                         9*******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098210.073300373IPR001739Methyl-CpG DNA binding
SuperFamilySSF541712.55E-8306366IPR016177DNA-binding domain
PfamPF014294.5E-6309354IPR001739Methyl-CpG DNA binding
Gene3DG3DSA:3.30.890.106.4E-5310394IPR001739Methyl-CpG DNA binding
SMARTSM003550.037426448IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723426453IPR007087Zinc finger, C2H2
PROSITE patternPS000280428448IPR007087Zinc finger, C2H2
SMARTSM003552.4472494IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286472499IPR007087Zinc finger, C2H2
PROSITE patternPS000280474494IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1265 aa     Download sequence    Send to blast
MATATVDSSI CDLQNHLHIE SLPLIDLRHL SQSELLSLSF CSSSPHRLRT DTADVSTPKI  60
DRSVFNESAG SRKQTFSRLR LAPRNNNASP SSNSTPVVPF QNTERQPLDE ENSQIISLLK  120
SLFGSDSNSI ENKNEHYHKL VSIPVIYNDY MRLPSTNNAE SQNVSIDIWD SSQGGLKRLE  180
VNHSISIRTA ESSSKKRKRG RPRKNENVNF DNNDNSELVE NKTIAVVCDN VEVESKKKEE  240
MVMVNKNGVV VDFGALGNME DPYGEELRRR TEGMQLKAEF LGFLEGFEGE WGSMRKKRRI  300
VDASLFGDVL PIGWKLSICI KKQAGRVWLA CTRYISPNGQ QFVSCKEVSS YLLSFSGLHD  360
VSRLNFGHMD GRIKLTDKIS PSIPADHTRK DGKNENDFIS YMALPVTCRS IEMGGCPVEV  420
QMGNKYKCHK CTVAFDKQDD LLQHLLSHQR APKQLRFGTS TNEEVIIKNG KYECQFCHKL  480
FEERHRFNGH LGNHIKEYLK RLDASNGKTT GESDEPALVK IPPGAGKIQT LIEFDRDSDA  540
ITVNTKISDE INSTIPYCEL KAITSVETHC GEQDRVFISS NDGAGKMNED TDAVAAENRV  600
SSEPALLNND IHRSSDETDV PKCPTNGTSD LGRKDKSFKN CSVAGGARDV TCIGHNNSNH  660
VSPCLIEELN QERDSNCGLL ASNAKVNTSN DDIIEDRHCS SPIDNMVIDG WGIDGKGEPI  720
TGCCNSYAAM GGNAAVNLRE QTISEGCYVA DSETGLFTFN AVETMLEKGS KGGLTGIENN  780
MNSVCTGMSN ESRFDDVVKS GTNEITIVCC GDNTVLAGDN VTSNEQGGNH GAGSVIPFLL  840
NQHTHLVENT ITGAPKCILR EPCQGKESED CPITTSGNEQ LFDFESNVIK VSNGTIDVAN  900
HDQVGSEIDL VPQTLTSIKQ EEISKTLTFA PFTNGFASKD YGISNSVLEK LEQGRNSGRG  960
SSDNEQSHDV KDIVNGLSFT TVEEDNQQEV KISCNGELHI ASDDNCTEQD ADVGTGTVQK  1020
CSLFAGSQLA FTAKDNPTGP YSGAVDELKQ KMDSVESAVC PSGSEPVWSV EKNLQTAFTG  1080
SVQEEPRVEN SENPRKDDSG IGFSSHPGPD ESDVISEFMW RNDEESNLLS DFADTSCQPV  1140
QTSSFFPPYD AVSDKGESEL FAEKFGATSG FEGLKLGGMD NMECNLPTSQ VSSHSDESKV  1200
GTYDAVMPKG ITSSIWLAKE DLPFVPKDSS RHHVPAVCVW CGREICQEAL ESEGQTSTMG  1260
FMLP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G097700.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302301.10.0uncharacterized protein LOC7461780 isoform X1
RefseqXP_024451191.10.0uncharacterized protein LOC7461780 isoform X1
RefseqXP_024451192.10.0uncharacterized protein LOC7461780 isoform X1
TrEMBLB9GUW90.0B9GUW9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s09790.10.0(Populus trichocarpa)