PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G068700.1
Common NamePOPTR_0002s06930g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 421aa    MW: 48443.9 Da    PI: 6.5121
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G068700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.11.8e-26121217185
            trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                         +Wt+++v++Li+a+++++e+  +++           +kk++W++vsk+m+ergf++sp+qC++k+++lnkryk+++++ +++ +++++++ 
  Potri.002G068700.1 121 KWTDKMVRLLITAVSYIGEDGTSDCgggmrrkftvlQKKGKWKSVSKVMAERGFHVSPQQCEDKFNDLNKRYKRLNDMLGRGtSCQVVENP 211
                         7*********************99888999999999**********************************************569999888 PP

            trihelix  80 pyfdql 85 
                         +++d +
  Potri.002G068700.1 212 ALLDVI 217
                         887765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-23119244No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MEGNLSQGGM IPGGAPFGGL DLQGSMRVHH QAQHPHTMHH HQHPLHRQGS STLTSVEEGF  60
PLTMGFMHNS DQNISMTDYN KGDRGKNSVS DEDEPSYTEE GADGHNDAIT GKKGTPWQRV  120
KWTDKMVRLL ITAVSYIGED GTSDCGGGMR RKFTVLQKKG KWKSVSKVMA ERGFHVSPQQ  180
CEDKFNDLNK RYKRLNDMLG RGTSCQVVEN PALLDVIDYL TEKEKDDVRK ILNSKHLFYE  240
EMCSYHNGNR LHLPHDPALQ RSLQLALRSR DDHDNDDARR HQHDDLDEDD QEIETDDHDE  300
FEENHASHGD CRGIHGVLGG SAKRPRQGQG HEDAFSPESS KAVWLQKQWM ESRTLQLEER  360
KLQIQQEMLE LEKQRFKWQR FSKKRDRELE KLRMENERIK LENEQMALEL KRKEMGADFN  420
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302181.20.0hypothetical protein POPTR_0002s06930g
TrEMBLB9GTJ40.0B9GTJ4_POPTR; Uncharacterized protein
STRINGPOPTR_0002s06930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27961329
FabidsOGEF50013157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-151sequence-specific DNA binding transcription factors