PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G039300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 149aa    MW: 16396.1 Da    PI: 5.0661
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G039300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.2e-181767255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr+++ +g+++AeIrd +    + +r +lg+f taeeAa+a++ a+ +++g
  Potri.002G039300.1 17 RYRGVRRRP-WGKFAAEIRDSTR---HgARLWLGTFNTAEEAARAYDGAAYSMKG 67
                        59*******.**********422...25***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.5381775IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-221776IPR016177DNA-binding domain
SMARTSM003807.4E-321780IPR001471AP2/ERF domain
CDDcd000185.43E-261775No hitNo description
Gene3DG3DSA:3.30.730.102.7E-301776IPR001471AP2/ERF domain
PfamPF008478.7E-141767IPR001471AP2/ERF domain
PRINTSPR003671.9E-111829IPR001471AP2/ERF domain
PRINTSPR003671.9E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MDHPNIGKVN QKGEEIRYRG VRRRPWGKFA AEIRDSTRHG ARLWLGTFNT AEEAARAYDG  60
AAYSMKGPLA ILNFPGEYPK TKVDSDITSS SISSSPLSSS SASSSSMSQN AERSGIGRGK  120
EVFEIEYLDD KLLEDLLDFE EENSKISE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-331413211114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G039300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029077.13e-75PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC59e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2K2BD461e-103A0A2K2BD46_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04040.11e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.11e-24ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]