PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G324600.1
Common NamePOPTR_0001s33210g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 198aa    MW: 21686.9 Da    PI: 8.2556
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G324600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000174365123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C +C+++F ++  L  H++ H
  Potri.001G324600.1 43 FPCLYCPRRFYTSQALGGHQNAH 65
                        89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.55E-64070No hitNo description
PROSITE profilePS5015710.6164370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MADPSIFNFL NHQHQQYPSS SSSSKPTKKS STNLPQPSSS RHFPCLYCPR RFYTSQALGG  60
HQNAHKRERA ALRRNNTTLN TSISTDPSLI IPSSFLNHNL PPPASTPAVP FFNQYHRYHQ  120
QALDHPMMIT NYQFPAPPST NGVYVSAPHY GGLYGVSAAA TSLDHDIGST GSGYDLSTST  180
DNDDPNDPTN IDLTLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G324600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164528e-89AC216452.1 Populus trichocarpa clone POP018-D02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298656.11e-142protein LATE FLOWERING
TrEMBLB9GFF81e-141B9GFF8_POPTR; Uncharacterized protein
STRINGPOPTR_0001s33210.11e-142(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15014811
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.12e-18C2H2 family protein