PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G295500.1
Common NamePOPTR_0001s30260g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 241aa    MW: 25363.3 Da    PI: 8.2854
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G295500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000176789123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ykC+ C+k Fs+   L  H  +H
  Potri.001G295500.1 67 YKCTVCNKAFSSYQALGGHKASH 89
                        9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.3E-46691IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.84E-106789No hitNo description
PfamPF139124.0E-136791IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.6796794IPR007087Zinc finger, C2H2
SMARTSM003550.00736789IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SuperFamilySSF576675.84E-10118145No hitNo description
PfamPF139122.4E-11122147IPR007087Zinc finger, C2H2
PROSITE profilePS501579.245123145IPR007087Zinc finger, C2H2
SMARTSM003551.7123145IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MALEALNSPT TAAPFNYEET WIKRKRSKRP RSESPSTEEE YLALCLIMLA RGGSPAPPQP  60
PTLDLSYKCT VCNKAFSSYQ ALGGHKASHR KSSSESTVAT AAENPSTSTT TNTTTTTTNG  120
RTHECSICHK TFLTGQALGG HKRCHYEGTI GGNNSSSASA AITTSDGGAV GGGGVIQSKS  180
QRSGGGFDFD LNLPALPEFE GPRISLQALC GDQEVESPLP GKKPRLMFSL KQEKTDMGSS  240
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.48680.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and leaves. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:8662738, ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in abiotic stress responses. Can repress the stress responsive genes DREB1A and LTI78. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. {ECO:0000269|PubMed:12032082, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20140232, ECO:0000269|PubMed:8662738}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G295500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, cold and drought stresses. Down-regulated by gibberellin. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:11351099, ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:8662738}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1453170.0EF145317.1 Populus trichocarpa clone WS01123_D03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458091.11e-178zinc finger protein ZAT10
SwissprotQ962896e-60ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLA0A2K2C5R11e-176A0A2K2C5R1_POPTR; Uncharacterized protein
STRINGPOPTR_0001s30260.11e-176(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.16e-44salt tolerance zinc finger
Publications ? help Back to Top
  1. Li C,Chang PP,Ghebremariam KM,Qin L,Liang Y
    Overexpression of tomato SpMPK3 gene in Arabidopsis enhances the osmotic tolerance.
    Biochem. Biophys. Res. Commun., 2014. 443(2): p. 357-62
    [PMID:24275141]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shi H,Chan Z
    The cysteine2/histidine2-type transcription factor ZINC FINGER OF ARABIDOPSIS THALIANA 6-activated C-REPEAT-BINDING FACTOR pathway is essential for melatonin-mediated freezing stress resistance in Arabidopsis.
    J. Pineal Res., 2014. 57(2): p. 185-91
    [PMID:24962049]
  4. Munekage YN,Inoue S,Yoneda Y,Yokota A
    Distinct palisade tissue development processes promoted by leaf autonomous signalling and long-distance signalling in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(6): p. 1116-26
    [PMID:25293694]
  5. van Buer J,Cvetkovic J,Baier M
    Cold regulation of plastid ascorbate peroxidases serves as a priming hub controlling ROS signaling in Arabidopsis thaliana.
    BMC Plant Biol., 2016. 16(1): p. 163
    [PMID:27439459]
  6. Corrales AR, et al.
    Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis.
    Plant Cell Environ., 2017. 40(5): p. 748-764
    [PMID:28044345]
  7. Nguyen HM, et al.
    Ethanol Enhances High-Salinity Stress Tolerance by Detoxifying Reactive Oxygen Species in Arabidopsis thaliana and Rice.
    Front Plant Sci, 2017. 8: p. 1001
    [PMID:28717360]
  8. Geilen K,Heilmann M,Hillmer S,Böhmer M
    WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions.
    Sci Rep, 2017. 7(1): p. 14235
    [PMID:29079824]
  9. Liu X, et al.
    Histone Deacetylase AtSRT1 Links Metabolic Flux and Stress Response in Arabidopsis.
    Mol Plant, 2017. 10(12): p. 1510-1522
    [PMID:29107034]
  10. Huang K, et al.
    Arabidopsis calcium-dependent protein kinase AtCPK1 plays a positive role in salt/drought-stress response.
    Biochem. Biophys. Res. Commun., 2018. 498(1): p. 92-98
    [PMID:29196259]