PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G232300.2
Common NamePOPTR_0001s23880g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 433aa    MW: 47900.2 Da    PI: 8.9696
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G232300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-05375395223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +C+ CgksF r++ L++H++++
  Potri.001G232300.2 375 TCSQCGKSF-RPEKLHSHMKSC 395
                         6********.**********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF061369.3E-4224291IPR010369Protein of unknown function DUF966
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MEVSSGIPTS CSSSGAGAGE VRRIHIIYFL SHNLGRIDQH PHLIRVHHSN RNGVYLRDVK  60
RWLADLRGKD MPKAFAWSYK RRYKKGYVWQ DLLDDDLITP ISDNEYVLKG SEILAPPANP  120
FVGSADGEKQ ENTGVEFVEN KAQNHEQRPS PNQICKDTTS RNTSSTEIPK ESPTFTSEIS  180
TVTDDSIEEE EEEEEDACKR NNSRDQEQID NKVEHSSFYT IFLGKSKKNQ DERKDNTSSI  240
EKMGTPSSFP SPSSSQSTFA RSKSYSTGTS KVLRNLITCG AVDTNDAALV LQSQKNKNKY  300
KPIDKPAGHI CKGEELGGSA RVFGTPWNQV QQQRQHNTAI ARKSFDGARS SKKQHNGFGS  360
PKVVSPAYKP VAVPTCSQCG KSFRPEKLHS HMKSCRGLKV LAKAASTYVE KTPSPSHNPV  420
DSASGDGYFL TN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G232300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006369486.10.0uncharacterized protein LOC18095011 isoform X2
TrEMBLA0A3N7EDR30.0A0A3N7EDR3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s23880.10.0(Populus trichocarpa)