PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G214700.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family YABBY
Protein Properties Length: 190aa    MW: 20906.8 Da    PI: 8.3915
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G214700.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY217.25.1e-6731563170
               YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 
                         +   se vCyv+Cn CntilavsvPs+slf++vtvrCGhC +llsvn+  + q+l+ ++      ++ ll + ++ ++n+ s     ++ +
  Potri.001G214700.4   3 LELVSEPVCYVHCNLCNTILAVSVPSSSLFNIVTVRCGHCGNLLSVNMGASLQTLPLQDP-----QKLLLINSEDLNKNFGSS----SKCN 84 
                         5667999*************************************************9996.....223344444444444432....2222 PP

               YABBY  94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         + +     se++++e pr+p +irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  Potri.001G214700.4  85 KVT----ASESTEHEPPRMP-AIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 156
                         222....2566778888865.5*****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.0E-727156IPR006780YABBY protein
SuperFamilySSF470951.83E-899149IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.6E-5104150IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MSLELVSEPV CYVHCNLCNT ILAVSVPSSS LFNIVTVRCG HCGNLLSVNM GASLQTLPLQ  60
DPQKLLLINS EDLNKNFGSS SKCNKVTASE STEHEPPRMP AIRPPEKRQR VPSAYNRFIK  120
EEIQRIKASN PDISHREAFS TAAKNWAHFP HIHFGLKLDS NKHAKLDHQS FAGEGTQKTS  180
GLYEINGSL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.2630.0bud| catkin| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}.
UniprotTISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G214700.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1474020.0EF147402.1 Populus trichocarpa clone WS01230_J05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453770.11e-140axial regulator YABBY 5 isoform X4
SwissprotQ9XFB02e-74YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A2K2C1G21e-138A0A2K2C1G2_POPTR; Uncharacterized protein
STRINGPOPTR_0001s22180.11e-121(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.16e-77YABBY family protein
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]
  2. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]