PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G157100.1
Common NamePOPTR_0001s15710g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 275aa    MW: 30561.2 Da    PI: 5.742
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G157100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-192674355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Potri.001G157100.1 26 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 74
                        56******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.32E-312581No hitNo description
SMARTSM003801.4E-342588IPR001471AP2/ERF domain
PROSITE profilePS5103220.7192582IPR001471AP2/ERF domain
PRINTSPR003673.4E-82637IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-212683IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.1E-292682IPR001471AP2/ERF domain
PfamPF008476.0E-122874IPR001471AP2/ERF domain
PRINTSPR003673.4E-84864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MNPSSSNRKK KQPQQVQQEP GTGLRFLGVR RRPWGRYAAE IRDPSTKERH WLGTFDTAEE  60
AALAYDRAAR SMRGSRARTN FVYSDMPAGS FVTSIISPDE QQSLQQQQHQ QHSDNNNNLS  120
SLFINVPPSH DHQPDSTPIF NQDFSSQCHL EEGFSSMTSG GGFWSCSSNN TYNQQLKHVI  180
QNNVLPHDFP SNISHSSDYN MSQCSWTDSS TSGLMGFEDQ TTMTSGFESV GSSSGSYFGF  240
DSGEYVHSPL FSRMPPVSDM VPDGFDLGSS AYFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-212681359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-212381362ATERF1
3gcc_A6e-212381362ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G157100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006369014.20.0ethylene-responsive transcription factor LEP
TrEMBLB9MUQ10.0B9MUQ1_POPTR; Uncharacterized protein
STRINGPOPTR_0001s15710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.14e-27ERF family protein