PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G154200.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 254aa    MW: 27962.3 Da    PI: 4.7238
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G154200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.75.1e-121211561855
                 AP2  18 eIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         eIrdp   + +  r++lg+f+ta eAa+a+++a+ kl+g
  Potri.001G154200.2 121 EIRDP---NrRGSRVWLGTFDTALEAARAYDRAAFKLRG 156
                         89**9...4334*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.318104164IPR001471AP2/ERF domain
SMARTSM003804.6E-19117170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-21120165IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-14120165IPR016177DNA-binding domain
CDDcd000181.02E-20121164No hitNo description
PfamPF008475.7E-7127156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSTDVSTALE FIKHHLLGDL LSPIATSSSA SFCQFSTNTE ISTYETTGCC SQASTSDSST  60
AFPYFLDSPG PDFFVFSSDF SPAQDNKTNI FEFEAKPEII DLLTPKPLDS TSHLNSQPST  120
EIRDPNRRGS RVWLGTFDTA LEAARAYDRA AFKLRGSKAI LNFPLEAGRC DVRANEEGER  180
KRLRECDAEE REDVKRVMRV VKREEPERDV PLTPSCCTAA WDICGDSKGV FNVPPLSPLS  240
PHPSLGFPQL LVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-171191651561ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-171191651864ATERF1
3gcc_A1e-171191651864ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.41440.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. Not expressed in cell culture. {ECO:0000269|PubMed:11440157, ECO:0000269|PubMed:7756828}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G154200.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2089990.0AC208999.1 Populus trichocarpa clone POP021-B12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368979.22e-80ethylene-responsive transcription factor 6
SwissprotQ404781e-42ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLJ7LJY72e-89J7LJY7_POPCA; ERF5-2
STRINGPOPTR_0001s15400.18e-78(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.16e-22ethylene responsive element binding factor 5