PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G146200.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARR-B
Protein Properties Length: 540aa    MW: 60247 Da    PI: 6.2049
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G146200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.18.3e-28312366156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k +++WtpeLH++Fv+ave+L G ++A+P++ile+mkv+gLt+++v+SHLQkYR++
  Potri.001G146200.3 312 KMKVDWTPELHRKFVQAVEKL-GVDQAIPSRILEVMKVEGLTRHNVASHLQKYRMH 366
                         5689*****************.********************************96 PP

2Response_reg30.32.1e-11201261109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+ d++   +  +++ le  +y +v ++ + +eal  + ++   +++ ++ ++m+++  ++ +k +++++ +lp i+ ++ +  +++ ++
  Potri.001G146200.3  20 VLLLDEDSMSAAEIKSKLEAMDY-IVYTFCNETEALSAISNEPgsFHVAIVEVSMSNS--SRSFKFLETSK-DLPTIMTSSIDCLNTMMKC 106
                         79999999999************.***************999989**********984..35555565555.899**9999999******* PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         + +Ga +fl Kp ++++l++
  Potri.001G146200.3 107 IALGAVEFLRKPLSEDKLRN 126
                         *****************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23008.4E-1716139No hitNo description
SuperFamilySSF521722.7E-1616134IPR011006CheY-like superfamily
SMARTSM004486.1E-418128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011024.58319132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-820127IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.62E-1021131No hitNo description
PROSITE profilePS5129415.73309368IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.3E-27310369IPR009057Homeodomain-like
SuperFamilySSF466892.87E-18311369IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-25312366IPR006447Myb domain, plants
PfamPF002493.6E-8315364IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MVCTTNDLSA WKDFPKGLRV LLLDEDSMSA AEIKSKLEAM DYIVYTFCNE TEALSAISNE  60
PGSFHVAIVE VSMSNSSRSF KFLETSKDLP TIMTSSIDCL NTMMKCIALG AVEFLRKPLS  120
EDKLRNIWQH VVHKAFNAGG SVQSKSLKPV KDSVVSMLEL KDGLEENENK NMEKTENVSQ  180
AQESNEQQSP ASDKYPAPST PQLKQGERLL DDGDCQDHIN CLIEKESVEQ EGDSKSVETT  240
CAMSEETLQA GDPQSFTETV IKEEDDSTDG VKSENNMCPN SQNKDTLNHS NGCAEKASSL  300
HNSHGTRANR KKMKVDWTPE LHRKFVQAVE KLGVDQAIPS RILEVMKVEG LTRHNVASHL  360
QKYRMHRRHI LPKEDERQWT QHRDQVQRSY YPHKPIMAYP PYHSNHALPP GPVYPMWGAT  420
GSHTAGVHMW GPPGYSPWPP TESCHWKPYP GMHADAWGCP VMPPHNPYST IPHYASGFQS  480
ASMVNNSCGM PQKLFDLQPA EEVIDKVVKE AINKPWLPLP LGLKPPSADS VLAELSRLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A7e-16317366655Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.84700.0bud
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G146200.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0289200.0CT028920.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440384.10.0two-component response regulator-like APRR2 isoform X2
SwissprotQ6LA431e-145APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A3N7EIT50.0A0A3N7EIT5_POPTR; Uncharacterized protein
STRINGPOPTR_0001s02910.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-149ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]