PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G143900.2
Common NamePOPTR_0001s02650g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LSD
Protein Properties Length: 157aa    MW: 16144 Da    PI: 8.4362
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G143900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.11.4e-133963125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        C+gCr+lL YP GA+sV+Ca+C++V
  Potri.001G143900.2 39 CSGCRNLLLYPVGATSVCCAVCNAV 63
                        ************************9 PP

2zf-LSD146.65.4e-1578102125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         CggC+tlL+Y rGA+sV+C++C+tV
  Potri.001G143900.2  78 CGGCHTLLMYIRGATSVQCSCCHTV 102
                         ************************9 PP

3zf-LSD140.35.2e-13116140125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         Cg+Cr lL+Y +GA+sV+Ca+C++V
  Potri.001G143900.2 116 CGSCRMLLMYRYGARSVKCAVCNFV 140
                         ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.1E-123666IPR005735Zinc finger, LSD1-type
PfamPF069431.6E-103963IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.8E-1575104IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-1278102IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.7E-13113141IPR005735Zinc finger, LSD1-type
PfamPF069432.5E-12116140IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPYAPPAP APAPPPPPPA NGAQSQLVCS GCRNLLLYPV GATSVCCAVC  60
NAVTAVPPPG TKMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLALEANQ VAHVNCGSCR  120
MLLMYRYGAR SVKCAVCNFV TPVGVSSSVN ERKFNT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.102041e-161bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2322471e-139CU232247.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368420.11e-106hypothetical protein POPTR_0001s02650g
SwissprotQ93ZB14e-79LOL1_ARATH; Protein LOL1
TrEMBLU5GS761e-106U5GS76_POPTR; Uncharacterized protein
STRINGPOPTR_0001s02650.11e-105(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-63lsd one like 1