PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G125900.1
Common NamePOPTR_0001s00800g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 249aa    MW: 27879.7 Da    PI: 9.5411
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G125900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0013727323
                        ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                        C++C+++F +   +  H+r+H
  Potri.001G125900.1  7 CKICNRRFANGKAMGGHMRSH 27
                        *******************99 PP

2zf-C2H210.80.0016140162123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC+ C+k F++   L  H  +H
  Potri.001G125900.1 140 FKCETCKKGFRSYQALGGHRASH 162
                         89**********99999998887 PP

3zf-C2H211.60.00089191213123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kCp C k+F +   L  H ++H
  Potri.001G125900.1 191 FKCPFCEKVFDSGQALGGHKKVH 213
                         89**********99999999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.92E-5232No hitNo description
PROSITE profilePS501579.785532IPR007087Zinc finger, C2H2
SMARTSM003550.21527IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-8529IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SMARTSM003550.13140162IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.71E-8140213No hitNo description
PfamPF139121.8E-10140164IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.034140167IPR007087Zinc finger, C2H2
PROSITE patternPS000280142162IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.949191218IPR007087Zinc finger, C2H2
SMARTSM003550.016191213IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-8191213IPR007087Zinc finger, C2H2
PROSITE patternPS000280193213IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEKTRICKIC NRRFANGKAM GGHMRSHLAK LPLPPKPIPP QETYNTLKKS PPETESTREP  60
TRRRSKRSRK SADEVAESMV KVTESSEQVS SISYLLAEED VALCLLMLSR DNWSEDAKQV  120
KKEDYLFGFT RAKYKSQGKF KCETCKKGFR SYQALGGHRA SHKKIKIHEE HEEGNGSGCG  180
EDNRSVGKRI FKCPFCEKVF DSGQALGGHK KVHFSYLPVT NAKISINFLD LNVPALEGTH  240
DDGEVSEA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G125900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453144.11e-149zinc finger protein ZAT9
TrEMBLA0A3N7FSN91e-148A0A3N7FSN9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s00800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-28C2H2-like zinc finger protein