PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G113600.1
Common NamePOPTR_0001s08350g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 303aa    MW: 34336.3 Da    PI: 5.2491
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G113600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.62.1e-1527118187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W+++ + +L++a  ++  +l+rg+l++++W++v++ +     + ++ +r+ +qCk++++ ++k+yk +k +  + + + +s++p+f++l+
  Potri.001G113600.1  27 CWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADTVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKSRVVSSNGTLTSSWPFFERLD 117
                         7****************************************99999*************************999998888899******98 PP

            trihelix  87 a 87 
                         a
  Potri.001G113600.1 118 A 118
                         5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.5E-2625119No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEDLIESSSV TPSTAPHSRS LPIREDCWSE EATSTLVDAW GRRYLELNRG NLRQKDWQDV  60
ADTVNALHGH TKKTHRTDVQ CKNRIDTIKK KYKIEKSRVV SSNGTLTSSW PFFERLDALI  120
GSNFNSSIKK PPSPSLSPSP PVALPLHPSY RRTPPVSSTP PPQPAALAVA LPQKRTLPVD  180
DGGYFRRNYS AMAAAAAAQE SDSEEEEEEE EEEEFEAGER ESVEEDGEGE GIKRLARAVE  240
RFGEVYERVE SEKLKQMVDL EKQRMKFAKD LEMERMRIFT ETQIQLEKIK KGKRAPDNER  300
DY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299577.10.0hypothetical protein POPTR_0001s08350g
TrEMBLB9GKS10.0B9GKS1_POPTR; Uncharacterized protein
STRINGPOPTR_0001s08350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.16e-40sequence-specific DNA binding transcription factors