PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G087900.2
Common NamePOPTR_0001s10970g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Nin-like
Protein Properties Length: 955aa    MW: 104883 Da    PI: 5.9042
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G087900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.23.7e-29576627152
              RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                         aek isle+l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++
  Potri.001G087900.2 576 AEKMISLEVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 627
                         5899**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.78562647IPR003035RWP-RK domain
PfamPF020426.1E-26580627IPR003035RWP-RK domain
SuperFamilySSF542775.89E-21851942No hitNo description
Gene3DG3DSA:3.10.20.2403.0E-25858939No hitNo description
PROSITE profilePS5174520.353858940IPR000270PB1 domain
SMARTSM006661.4E-23858940IPR000270PB1 domain
CDDcd064073.23E-34859939No hitNo description
PfamPF005644.0E-16859939IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 955 aa     Download sequence    Send to blast
MPEPTEVGGG GESEGRKSME LDLDLDSSWP LDQISFISSN PMSTFLISSS NEQPCSPLWA  60
FSDAADDRLL AAAAGGGQAS SSFVGGLRLS DNPIVLTCNP NSVTESKGEN DDNSKLPSPF  120
LGLMPIDNPD GYCIIKERMT RALRHFKEST EQHILAQVWA PVKNGGRYAL TTSGQPFVID  180
PHSNGLHQYR MVSLMYKFSV DGESDGELGL PGRVFRQKLP EWTPNVQYYS SKEYSRLDHA  240
LHYNVRGTVA LPVFEPSGQS CVGVVELIMT SQKINYAPEV DKVCKALEAV DLKSSEILDP  300
PSTQICNEGR QNALAEILEI LTMVCETHKL PLAQTWVPCM HRSVLAYGGG LKKSCTSFDG  360
SCNGQVCMST TDVAFYVVDA HMWGFREACL EHHLQKGQGV AGRAFFSHNL CFCPDITQFC  420
KTEYPLVHYA RMFGLTSCFA ICLRSSYTGD DDYILEFFLP PSFTDSREWK TLLGSILAIM  480
KQDFQSLQVA SGMDLEEEEG FVEMIQVSTN GRLDLRLECI QIPQSTKSPP DDNALLNGPI  540
VQIYPEKKQL MLDLDVIKNG GKKETKKPKE RKRGKAEKMI SLEVLQQYFT GSLKDAAKSL  600
GVCPTTMKRI CRQHGISRWP SRKIKKVNRS LSKLKRVIES VQGTEGAFST SSLPVAVGTI  660
SWPPNLNGRN QQNSPNSKSP EHHGDKNGSP TCRTPGSDVK AELGTGSNRS KTRGGSRGES  720
AGTPTSHGSC QGCPENESAP AKDPSVSPVH ERCIKAGGSP ELVLQQTREL NLSAAYSIPD  780
AFFATEAQEQ FGGMLIEDTG SSKDLSNLCP AMADAIVDER FPESKWTDPP SSDINPTQMI  840
AALSIAMPHV TSRQEMNSVT IKATYREDMI RFRISLSSGI AKLKEEVAKR LRLEVGTFDI  900
KYLDDDHEWI LIARDADLHE CMDVSRSSNS NMIRVSVHDA NANLGSSCES TWEI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269|PubMed:18826430}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G087900.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024449513.10.0protein NLP7 isoform X2
SwissprotQ84TH90.0NLP7_ARATH; Protein NLP7
TrEMBLA0A2K2BUQ70.0A0A2K2BUQ7_POPTR; Uncharacterized protein
STRINGPOPTR_0001s10970.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.10.0NIN like protein 7
Publications ? help Back to Top
  1. Xu N, et al.
    The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators.
    Plant Cell, 2016. 28(2): p. 485-504
    [PMID:26744214]
  2. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  3. Yu LH, et al.
    Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation.
    Sci Rep, 2016. 6: p. 27795
    [PMID:27293103]
  4. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]
  5. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]
  6. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  7. Liu KH, et al.
    Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks.
    Nature, 2017. 545(7654): p. 311-316
    [PMID:28489820]
  8. Li Z, et al.
    The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1.
    New Phytol., 2017. 216(4): p. 1205-1222
    [PMID:28850721]
  9. Cao H, et al.
    Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation.
    Front Plant Sci, 2017. 8: p. 1703
    [PMID:29051766]
  10. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]
  11. Karve RA,Iyer-Pascuzzi AS
    Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release.
    Plant Signal Behav, 2018. 13(1): p. e1414122
    [PMID:29215953]
  12. Zhao L, et al.
    The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium.
    Sci Rep, 2018. 8(1): p. 1487
    [PMID:29367694]