PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G079900.1
Common NamePOPTR_0001s11770g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 263aa    MW: 28931.7 Da    PI: 7.6125
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G079900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-17132182255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++Ae rdp +ng  +r++lg++ ta+eAa a+++a+ +++g
  Potri.001G079900.1 132 HYRGVRQRP-WGKFAAETRDPAKNG--ARVWLGTYETAKEAALAYDRAAYRMRG 182
                         7********.**********99987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-30131191IPR001471AP2/ERF domain
PfamPF008471.1E-13132182IPR001471AP2/ERF domain
PROSITE profilePS5103223.261132190IPR001471AP2/ERF domain
SMARTSM003802.8E-34132196IPR001471AP2/ERF domain
CDDcd000182.24E-29132191No hitNo description
SuperFamilySSF541715.89E-22132192IPR016177DNA-binding domain
PRINTSPR003671.8E-13133144IPR001471AP2/ERF domain
PRINTSPR003671.8E-13172192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MNEISSLCEF SALSHHHQHR STSFNSLISC LNETWGDLPL RVDDSEDMVI YNFLRDAVCC  60
GWSPLDLSTS TTTTSSTTTT TTTTTTTITT NVVKAEPKDE LDLEAEPIKL VQESSLNMEA  120
VVTKKVVTKG RHYRGVRQRP WGKFAAETRD PAKNGARVWL GTYETAKEAA LAYDRAAYRM  180
RGSKALLNFP HKIGSNEPDP VRITAKRRQP DTGLTAVDTG SAKMRKMLVD EGAELERGVG  240
YSVFQVGHHK GLMPVGEQLL AS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-37129197270ATERF1
3gcc_A1e-37129197270ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at low levels in buds and leaves. Not expressed in cell culture. {ECO:0000269|PubMed:7756828}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G079900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2289180.0CU228918.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002297926.10.0ethylene-responsive transcription factor 2
SwissprotQ404793e-89ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLB9GK350.0B9GK35_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-59ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]