PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G079800.1
Common NamePOPTR_0001s11780g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 288aa    MW: 31845.7 Da    PI: 8.6269
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G079800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-20129179255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta eAaka++ a+ +l+g
  Potri.001G079800.1 129 HYRGVRRRP-WGKYAAEIRDP---NkKGARVWLGTFDTAIEAAKAYDSAAFRLRG 179
                         7********.**********9...4345*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-32128188IPR001471AP2/ERF domain
CDDcd000186.55E-32129187No hitNo description
PROSITE profilePS5103224.645129187IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22129188IPR016177DNA-binding domain
PfamPF008471.7E-14129179IPR001471AP2/ERF domain
SMARTSM003803.3E-37129193IPR001471AP2/ERF domain
PRINTSPR003672.2E-13130141IPR001471AP2/ERF domain
PRINTSPR003672.2E-13169189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MASFDHEAST LELIRQHLLT DFASMDSFIS NLDDLCSTST TSTTDDYYIK SESTEFDPFD  60
QPQFKLQTQS SIESKPQYSS PKSSTSLSQR KPSMIKDIAI PPPATLNMNP QVAQPVVNKT  120
DLSSEQDRHY RGVRRRPWGK YAAEIRDPNK KGARVWLGTF DTAIEAAKAY DSAAFRLRGS  180
KAILNFPLEA GKSNSQQPEQ FLETSCKKRK FEGIKSSVEG TNSITNKVVK RETSSPESEV  240
KAVASGPLTP SSWKGFWDGE TMGIFSVPPL SPLSPHPSFG YSRLMVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-30128188161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.158360.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G079800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165940.0AC216594.1 Populus trichocarpa clone POP017-A13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299408.10.0ethylene-responsive transcription factor ERF105
TrEMBLB9GK340.0B9GK34_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.16e-60ERF family protein