PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G069900.1
Common NamePOPTR_0001s12770g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 398aa    MW: 43228.6 Da    PI: 8.3838
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G069900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-05628123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y C+ C+k F r  nL+ H r H
  Potri.001G069900.1  6 YICEVCHKGFQRDQNLQLHRRGH 28
                        89*******************88 PP

2zf-C2H213.40.0002282104123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k++  +s+ k H + +
  Potri.001G069900.1  82 WKCDKCSKRYAVQSDWKAHTKIC 104
                         58*****************9987 PP

3zf-C2H211.30.001112130523
                         TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                         dCg+ Fsrk+++++H   +
  Potri.001G069900.1 112 DCGTIFSRKDSFVTHRAFC 130
                         8**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.5E-6528No hitNo description
Gene3DG3DSA:3.30.160.601.9E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.038628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.741628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551904777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.8E-470103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.5E-677102No hitNo description
SMARTSM0035513082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRQNT QAKKRVYVCP EPTCVHHDPS  60
RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH TKICGTREYR CDCGTIFSRK  120
DSFVTHRAFC DALAEENCKV NQNLAATGGM LQAQEPFSSS MPSSDACTNK SAAMNLTISA  180
ENSDSALRPL SLNSSGMVMS SNLNPRTSLP LACFSSLDGS NTSPSAIGSS YTSATALLQK  240
AAVMGAKISD NSIAPILFKG FNGYSTTSMN SSGLVPEGSS IDGSNIGPHA ANMNGIYLGD  300
TEMFDKNLDP GYPRNSVCQT GFFESPLLMD IENGNAAHAL AGEAYMGGSE KMTVDFLGVE  360
PPTGHSAVGR KRNYEGNIMG LGYSNAQQNL HNLHSDW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-3378136361Zinc finger protein JACKDAW
5b3h_F7e-3378136361Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G069900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024448903.10.0protein indeterminate-domain 2-like
SwissprotQ9SCQ62e-96IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2K1R5L60.0A0A2K1R5L6_POPTR; Uncharacterized protein
TrEMBLA0A3N7FEG20.0A0A3N7FEG2_POPTR; Uncharacterized protein
STRINGPOPTR_0001s12770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1704078
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.18e-99indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]