PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G069300.1
Common NamePOPTR_0001s12820g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 294aa    MW: 32119.8 Da    PI: 4.4362
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G069300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-193886355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Potri.001G069300.1 38 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 86
                        67******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.26E-303793No hitNo description
PROSITE profilePS5103220.7053794IPR001471AP2/ERF domain
SMARTSM003801.3E-3437100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-293894IPR001471AP2/ERF domain
PRINTSPR003673.8E-83849IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-213895IPR016177DNA-binding domain
PfamPF008475.7E-124086IPR001471AP2/ERF domain
PRINTSPR003673.8E-86076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDFTYSTKTN SSPSPSKTKR KQQQQQQQNQ QEQQEVRFLG VRRRPWGRYA AEIRDPSTKE  60
RHWLGTFDTA EEAALAYDRA ARSMRGSKAR TNFVYSDMPP ASSVTCIISP DESQHDNSAL  120
FAPPPQHNTH QNDTNCQQLY FSQDQQPFNA HAYGNSNSNW LAGGAGWVQG FGAGAGDGPC  180
GSYEPNSAGS LDVASGLNYL SNTDNIELPP LPPDVNSSCY GCDMGREFWN DTGFLGFQEE  240
QLDDVNGLEV SGSILGFDSN EFGLHGSLFG IVPSVSNTVT DGFDLGSSST FYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-203893359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G069300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002297886.20.0ethylene-responsive transcription factor LEP
TrEMBLB9GMV60.0B9GMV6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s12820.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.14e-34ERF family protein