PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G047500.1
Common NamePOPTR_0001s14780g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 287aa    MW: 31703.3 Da    PI: 8.4634
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G047500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023112134123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C + F ++  L  H++ H
  Potri.001G047500.1 112 FSCNYCQRKFYSSQALGGHQNAH 134
                         89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.5E-6108139No hitNo description
PROSITE profilePS5015711.427112139IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEPPARSEAC LSETSSIISV SNAPLSLKPS VIMKSQKEVK QLEEDQEEEE EERHQQGVDT  60
NYGLVLDLSL SSKDSKQDSS KPQLNLIDSF DMDPSRKSLD TPQGNETEPR VFSCNYCQRK  120
FYSSQALGGH QNAHKRERTL SKRGQRISAA SFALLQPNYS HQNGYTSMAS LPLHGSFNRS  180
LGIQVHSMIH KPFSTSSSSS IYGQNGWSRK PIDQQPAIGR LASDKFQMAT SIKGSSSSNG  240
VARFESTRKF SPVSTEGIGG FWWDGGVNHL KTKQDDLQKL DLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G047500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002297800.20.0zinc finger protein 1
TrEMBLB9GMC40.0B9GMC4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s14780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.13e-42C2H2 family protein