PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G026000.1
Common NamePOPTR_0001s06330g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 326aa    MW: 36419.9 Da    PI: 4.9445
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G026000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix491.6e-1572159186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  + +Li+a  e+  +l+rg+lk+++W++v++ + +++ +++s+k   qCk++++ ++k+yk +k+ + ++  + +s++p+fd l+
  Potri.001G026000.1  72 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKDVAEIVsSREDYSKSAKtdiQCKNRIDTVKKKYKLEKAKMASG--GGVSSWPFFDPLD 159
                         7*************************************867778877754449********************97..67779*****997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.8E-2570161No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDDDDDIQSH SNTTESSSPS PSPPDGRITV TVPATATVPP TPPPQQTDNS LALVLPMKSK  60
ANGSGGGGRE DCWSEGATAV LIDAWGERYL ELSRGNLKQK HWKDVAEIVS SREDYSKSAK  120
TDIQCKNRID TVKKKYKLEK AKMASGGGVS SWPFFDPLDR LIGSTARVPA VASGSKFPYH  180
FRRNQNMKAR IRKWGKDEDD DDDDEDEEEE EEEEEEEEEE EDGGWGNSIR MLTQAMLKFG  240
EAYEQAETAK LQQVVEMEKT RMKFAKELEL QRMQFFMQTQ MEISQLKNGR KGGSASGNHH  300
HHHHHHHTGN NITASNNVNN SDSDN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002297748.21e-171hypothetical protein POPTR_0001s06330g
SwissprotQ9LJG83e-89ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLB9GM191e-170B9GM19_POPTR; Uncharacterized protein
STRINGPOPTR_0001s06330.11e-170(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.16e-56sequence-specific DNA binding transcription factors