PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta013345
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family NAC
Protein Properties Length: 186aa    MW: 20678.6 Da    PI: 7.0565
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S24109293PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM148.33.9e-46151532128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                 +GfrFhPtdeel+++yL+kkv+++ l++ ++i+++d y+++PwdLp          k  a  +e+ewyfFs+rd++y++g r+nra+ sgyWk tg+d 
  Pta013345  15 LVGFRFHPTDEELITHYLEKKVSSSALPA-SIIADIDPYQHDPWDLPVfqlficvsaK--AlfGENEWYFFSRRDREYPSGARPNRAAGSGYWKVTGSDI 111
                68***************************.89***************55799977543..245999********************************** PP

        NAM  91 evlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                +++s     + ++vg+kk+ vfykg+  +g+ t+W+mhey l
  Pta013345 112 PIVSMsgstSPRKVGVKKSVVFYKGKGGEGVMTNWIMHEYCL 153
                ***9955554555***************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-4910158IPR003441NAC domain
PROSITE profilePS5100547.1814174IPR003441NAC domain
PfamPF023652.1E-2516153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEGVAFQQQA VPELLVGFRF HPTDEELITH YLEKKVSSSA LPASIIADID PYQHDPWDLP  60
VFQLFICVSA KALFGENEWY FFSRRDREYP SGARPNRAAG SGYWKVTGSD IPIVSMSGST  120
SPRKVGVKKS VVFYKGKGGE GVMTNWIMHE YCLAQTLPTQ KEGSVPILKR MHGYGENAKM  180
VEGDGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-5031532140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.72170.0embryo| xylem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during anther and flower development and leaf senescence. {ECO:0000269|PubMed:22278768}.
UniprotTISSUE SPECIFICITY: Highest expression in stamens. Expressed in leaves. {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:22278768}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019453752.13e-60PREDICTED: NAC transcription factor 56-like
RefseqXP_019464935.12e-60PREDICTED: NAC transcription factor 56-like
SwissprotQ8H4S48e-59NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBLD5ABS01e-68D5ABS0_PICSI; Uncharacterized protein
STRINGXP_010485778.15e-58(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-60NAC domain containing protein 47
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]