PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta011784
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family TCP
Protein Properties Length: 182aa    MW: 19857.4 Da    PI: 9.811
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-34821PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1128.4e-3531113382
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...sec.eaesssssa 82 
                +k+++++++hTkv+gR+RRvR++a  aar+F+L++eLG+++d++ti+WLl++a+pai ++tgt++ +a   s    ++ss+ s+
  Pta011784  31 AKRSSTKDRHTKVNGRGRRVRIPAASAARIFQLTRELGHKSDGETIQWLLNKAEPAIMAATGTGTVPAlpmS-IiGPVSSNPSK 113
                6999***********************************************************888874431.13222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.8E-2935116IPR005333Transcription factor, TCP
PROSITE profilePS5136925.8713690IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSSEEVPNQA EQRIVLADPQ SNDPARKALV AKRSSTKDRH TKVNGRGRRV RIPAASAARI  60
FQLTRELGHK SDGETIQWLL NKAEPAIMAA TGTGTVPALP MSIIGPVSSN PSKLQQHPQT  120
PASVHSILAL PPFGPSAGMD FEFQGGQLSH RPFTSMLWGS EDQALDDHRI DHSLKQNNLH  180
CY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.217250.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541424.13e-43transcription factor TCP11
RefseqXP_028196567.13e-43transcription factor TCP11-like
TrEMBLH9MA791e-57H9MA79_PINRA; Uncharacterized protein (Fragment)
TrEMBLH9W0S81e-57H9W0S8_PINTA; Uncharacterized protein (Fragment)
STRINGGLYMA13G20710.21e-42(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.13e-38TCP family protein