PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta008119
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family NAC
Protein Properties Length: 313aa    MW: 35804.2 Da    PI: 9.2187
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-73719PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.98e-53321591128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrF Ptdeel+v+yL+k+v+++++++  +i+e+d+yk++Pw+Lp+k+  +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg+dk+v++  ++ +
  Pta008119  32 LPPGFRFYPTDEELMVHYLCKRVASQPFPI-PIIAEIDLYKFDPWQLPEKALFGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGTDKPVTAGaNKIK 130
                79****************************.88***************8888899**************************************9767778 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kk Lvfykg+ap+g+kt+W+mheyrl
  Pta008119 131 VGVKKALVFYKGKAPRGVKTNWIMHEYRL 159
                ***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-6527186IPR003441NAC domain
PROSITE profilePS5100561.76332186IPR003441NAC domain
PfamPF023651.1E-2633159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
XGFCNFGLAY TCMREIGRMG CKSGPNSEQI NLPPGFRFYP TDEELMVHYL CKRVASQPFP  60
IPIIAEIDLY KFDPWQLPEK ALFGEKEWYF FSPRDRKYPN GSRPNRAAGS GYWKATGTDK  120
PVTAGANKIK VGVKKALVFY KGKAPRGVKT NWIMHEYRLA DSASRAAKRK GSIRLDDWVL  180
CRIYEKHYAT QKNGPKESNE LSSCVDQEED QYMVAAASTS PPDMDDSKLL INLPRINSLN  240
RINSLLKFPT REVMKMPDPN YNQTEQQYSR AETVAGSNSG CQAIEYDQNS PYWEKPSNSD  300
TTMIRWCRTR FLX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-83181923171NO APICAL MERISTEM PROTEIN
1ut4_B1e-83181923171NO APICAL MERISTEM PROTEIN
1ut7_A1e-83181923171NO APICAL MERISTEM PROTEIN
1ut7_B1e-83181923171NO APICAL MERISTEM PROTEIN
3swm_A2e-83191927174NAC domain-containing protein 19
3swm_B2e-83191927174NAC domain-containing protein 19
3swm_C2e-83191927174NAC domain-containing protein 19
3swm_D2e-83191927174NAC domain-containing protein 19
3swp_A2e-83191927174NAC domain-containing protein 19
3swp_B2e-83191927174NAC domain-containing protein 19
3swp_C2e-83191927174NAC domain-containing protein 19
3swp_D2e-83191927174NAC domain-containing protein 19
4dul_A1e-83181923171NAC domain-containing protein 19
4dul_B1e-83181923171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269|PubMed:25005917}.
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf blades and callus. Weakly expressed in developing flowers. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
UniProtTranscription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}.
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392980.19e-92NAC transcription factor 47-like
RefseqXP_024392981.19e-92NAC transcription factor 47-like
SwissprotA0A3Q7HH642e-87JA2L_SOLLC; NAC domain-containing protein JA2L
SwissprotQ52QH41e-87NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA9NPH40.0A9NPH4_PICSI; Uncharacterized protein
STRINGPP1S5_359V6.14e-91(Physcomitrella patens)
STRINGEFJ078412e-91(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.16e-88NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  6. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  7. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]
  8. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]
  9. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]