PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta007882
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family NAC
Protein Properties Length: 325aa    MW: 36139.9 Da    PI: 6.4014
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-17342PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.43e-1936075128
        NAM  75 nratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                +ra+ sgyWkatg dk++ s+     ++ vg+kk Lvfy g+ap+g+kt+W+mheyrl
  Pta007882   3 HRAAGSGYWKATGADKPIPSTasrgVKKRVGVKKALVFYVGKAPSGSKTNWLMHEYRL 60 
                6999**************99877665666***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.4381135IPR003441NAC domain
SuperFamilySSF1019412.09E-19362IPR003441NAC domain
PfamPF023651.4E-9460IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
XAHRAAGSGY WKATGADKPI PSTASRGVKK RVGVKKALVF YVGKAPSGSK TNWLMHEYRL  60
ADINRPARKK DSFRVSNGVF SLFGFXVISH LCWDLVPPLN SIFSMSALSF SMYXSLKVLF  120
LLQLDDWVLC RIYNRKIVAE KLALEPNESF NDVPMETIDE KEMKDEPTST SINHSAIEQS  180
NPSFDHLSKL GSSPTGYNAV PPGASPMNSN IRVQNLDFLQ NSSTPFSGST LKAPAQNTAF  240
NPISPSQTNC NSTELISGLH DDFSCSKASS FSEPIWEKEE VESSFKLENI SQEQQQSLFN  300
FDLEGLQSSF PHLDKISFSD AYQDW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-21314190171NO APICAL MERISTEM PROTEIN
1ut4_B8e-21314190171NO APICAL MERISTEM PROTEIN
1ut7_A8e-21314190171NO APICAL MERISTEM PROTEIN
1ut7_B8e-21314190171NO APICAL MERISTEM PROTEIN
3swm_A8e-21314193174NAC domain-containing protein 19
3swm_B8e-21314193174NAC domain-containing protein 19
3swm_C8e-21314193174NAC domain-containing protein 19
3swm_D8e-21314193174NAC domain-containing protein 19
3swp_A8e-21314193174NAC domain-containing protein 19
3swp_B8e-21314193174NAC domain-containing protein 19
3swp_C8e-21314193174NAC domain-containing protein 19
3swp_D8e-21314193174NAC domain-containing protein 19
4dul_A8e-21314190171NAC domain-containing protein 19
4dul_B8e-21314190171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.193650.0root| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLO650611e-133O65061_PICMA; ATAF1-like protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.14e-26NAC family protein