PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta007425
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family Trihelix
Protein Properties Length: 357aa    MW: 40660.8 Da    PI: 5.0719
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-42074PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.51.9e-1451136182
   trihelix   1 rWtkqevlaLiearremeerlrrg......klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                rWt  e laL++ +  +e++l+ +      +    +W+ +s+++++  ++r++ qC++kwe l  +ykkike+e++  ++++s + + 
  Pta007425  51 RWTLTEMLALVREKWAVENELQLSpsksqfSGVSDKWSIISNRCAASHVQRTAGQCRKKWELLISDYKKIKEWERQ--CGVESYWNLS 136
                8*********************6422222246789****************************************8..8999888765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-951157No hitNo description
PROSITE profilePS500907.00462114IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEGSHHYVSH FAKTQQEEGQ PASSIEEMDP TLQEAVRLSS SHSTRLQVAP RWTLTEMLAL  60
VREKWAVENE LQLSPSKSQF SGVSDKWSII SNRCAASHVQ RTAGQCRKKW ELLISDYKKI  120
KEWERQCGVE SYWNLSHSAK REHKLPFYLE RELFDAMDAN LDKTPTACPD ATFDSMDVAA  180
DSLFTSNDDS QDXDGQDAGS NGFRYMIIFI DVXFSDCLDE YQPFCHCLSG SYGHCACEGS  240
GNEPLDSTVR HKRRRCSIED DREHDIISVL RENCQNIQAV IRETTQAQMC SSQLDRDMYW  300
KGIEVNKQVQ LQTSELDREL KRKQGQDLID VLGGLVNAVN RLVDTIQNKS SQQLNGP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.206240.0root| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NXN90.0A9NXN9_PICSI; Putative uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.16e-25Trihelix family protein