PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta007225
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family AP2
Protein Properties Length: 375aa    MW: 42223.6 Da    PI: 4.5506
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-43273PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2262.3e-084501455
        AP2 14 rWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
               r++A+++d  ++n+   k+ ++++lg ++ +e Aa  ++ a++k++g
  Pta007225  4 RYEAHLWDkNCWNQgqnKKgRQVYLGAYDDEEAAAHTYDLAALKYWG 50
               799*****999955577557*************************98 PP

2AP252.11.6e-1693144155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV +++ +grW+A+I  +     +k+ +lg+f t eeAa+a++ a+ +++g
  Pta007225  93 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFSTQEEAARAYDMAAIEYRG 144
                89****99**********988422...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.394158IPR001471AP2/ERF domain
CDDcd000183.70E-12458No hitNo description
SMARTSM003804.1E-10464IPR001471AP2/ERF domain
PfamPF008473.5E-4450IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-10560IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-101459IPR001471AP2/ERF domain
CDDcd000182.58E-2693154No hitNo description
SuperFamilySSF541713.86E-1893154IPR016177DNA-binding domain
PfamPF008474.3E-1293144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-1994153IPR001471AP2/ERF domain
SMARTSM003802.6E-2894158IPR001471AP2/ERF domain
PROSITE profilePS5103218.95394152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MDWRYEAHLW DKNCWNQGQN KKGRQVYLGA YDDEEAAAHT YDLAALKYWG TETILNFPLN  60
TYAKELEEMQ SVSKEEYLAS LRRRSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVLGNKYL  120
YLGTFSTQEE AARAYDMAAI EYRGLNAVTN FDLSRYMSRL RPAKDIINSD GDDVVVSNGD  180
DSGSSLLVPA GVPIETSNNT DDDNMSSLLL LQQPPQLSWT PPQLEEKESS SAAPEDPTDD  240
LDHLFSQSSK FKEIMEIRSS GHGHGHKVPG VELEDLHNVE TANFAEDLEM FFSNSSNMLG  300
SDAELSLNVD SPGSAMNNNM FCQPDHLHLQ MPFDMHDLCS GEFLDLDHHG QQPELEYPLI  360
DPISSFPNFA VRTCS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440585.11e-100PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D2Q6I21e-100A0A0D2Q6I2_G
STRINGPOPTR_0003s18350.12e-94(Populus trichocarpa)
STRINGSolyc12g010490.1.13e-94(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-75AP2 family protein