PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta006973
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family AP2
Protein Properties Length: 400aa    MW: 45082.3 Da    PI: 6.4107
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-73959PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2483.2e-151170155
        AP2  1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
               s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aak ++ a++k++g
  Pta006973 11 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDKEEKAAKSYDLAALKYWG 70
               78*******************988886678446*************************98 PP

2AP247.15.8e-15115164355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Pta006973 115 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 164
                9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.47E-201178No hitNo description
SuperFamilySSF541716.54E-161180IPR016177DNA-binding domain
PfamPF008472.1E-111170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-151279IPR001471AP2/ERF domain
PROSITE profilePS5103218.7421278IPR001471AP2/ERF domain
SMARTSM003801.9E-281284IPR001471AP2/ERF domain
PRINTSPR003677.0E-71324IPR001471AP2/ERF domain
CDDcd000185.35E-25113174No hitNo description
SuperFamilySSF541714.38E-18113174IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.7E-19114172IPR001471AP2/ERF domain
PROSITE profilePS5103219.23114172IPR001471AP2/ERF domain
SMARTSM003802.9E-34114178IPR001471AP2/ERF domain
PfamPF008471.1E-9115164IPR001471AP2/ERF domain
PRINTSPR003677.0E-7154174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
XSIDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCKKEGQT RKGRQVYLGG YDKEEKAAKS  60
YDLAALKYWG PSTHINFPLN TYEKELEEMK HMTRQEYVAN LRRKSSGFSR GASMYRGVTR  120
HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGTNAVTN FDISRYDVKR  180
ILASNTLLVG EMARLNKDQL AEPLTAEPPD QPEVPIVIHQ IANEKYSAKE TDYEDEDTKN  240
NNWQMQVQVS DGDQNGHINS CSNEPSDHGK IWDDDQKPNQ CFTESQHLAA LHNLMGLDHA  300
TTTERNGESS NNNNNNNPLL TDISASPTSP GASMGREEHE EEAAAAMSPN TQNENGLLFS  360
SKQPALQINN ALSSWMTQAA RPAINSMAHH IPMFASWTDT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.183011e-175needle| root| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160953.11e-136hypothetical protein PHAVU_001G031200g
SwissprotQ389141e-125ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLQ76H961e-145Q76H96_PINTH; AINTEGUMENTA-like protein
STRINGVIT_18s0001g08610.t011e-134(Vitis vinifera)