PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta006477
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family TCP
Protein Properties Length: 503aa    MW: 55054.5 Da    PI: 9.4167
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-49553PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.31.4e-30581792121
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssasnsssg 88 
                +g+kdrhsk+ T++g+RdRRvRls+++a++++dLqd+LG+ ++sk++ WL+++ak ai++l+ +                         + +s+     +
  Pta006477  58 TGGKDRHSKVLTAKGLRDRRVRLSVPTAIQLYDLQDRLGYEQPSKAVGWLINAAKSAIDDLPVLdpemdsaasvdnvA-----------QLNSS-----N 141
                689*************************************************************55333222222221...........11111.....1 PP

        TCP  89 ...............................kaaksaakskksqksaasalnlakesrakarar 121
                                               +                           kar r
  Pta006477 142 csnvdhsagspresgtaitasafmgfrvgndS--------------------------VKARGR 179
                11221111122222333444444444443320..........................233333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.8E-2759239IPR005333Transcription factor, TCP
PROSITE profilePS5136930.9560118IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MEMQKKDLAS FSETMNKGRL QEDCDKMQVN GKGSKRKAWM MEGMVEQEWK IVSVSRLTGG  60
KDRHSKVLTA KGLRDRRVRL SVPTAIQLYD LQDRLGYEQP SKAVGWLINA AKSAIDDLPV  120
LDPEMDSAAS VDNVAQLNSS NCSNVDHSAG SPRESGTAIT ASAFMGFRVG NDSVKARGRK  180
SQKDINGKLV PITTQKGSDL ARTSSSISDG SIKGSAEHTS NCSISESTSR IESRLKESEL  240
ATKKSVSSSR SPPAIQQMNS MQHFLTSGML KSVFPNTPLP SESKSSKNDN PCGIHTQILS  300
GTSNVQQVWD YNNRLSYTDM LCSHGSHPLQ NLSSSSTAPV QKYFPPVPSS PGSQIGRNSC  360
LQSHEMPESS ISFIDPKQTR PFGGSAEPQG HGQDNLFSNM IMKRVEQVHQ QQQQQEAQMR  420
IKHYASTSVP RFSNDINLLT SSLSARELHQ AISSSITNMP SLSHTNKNVY GEVSANVARD  480
FAPSQDYEAR VIPGFHYAGQ HKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2065119155Putative transcription factor PCF6
5zkt_B3e-2065119155Putative transcription factor PCF6
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.346940.0root
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.23e-33TCP family protein